276 related articles for article (PubMed ID: 11835512)
1. Toward minimalist models of larger proteins: a ubiquitin-like protein.
Sorenson JM; Head-Gordon T
Proteins; 2002 Mar; 46(4):368-79. PubMed ID: 11835512
[TBL] [Abstract][Full Text] [Related]
2. Multiple folding mechanisms of protein ubiquitin.
Zhang J; Qin M; Wang W
Proteins; 2005 May; 59(3):565-79. PubMed ID: 15768406
[TBL] [Abstract][Full Text] [Related]
3. The folding pathway of ubiquitin from all-atom molecular dynamics simulations.
Marianayagam NJ; Jackson SE
Biophys Chem; 2004 Oct; 111(2):159-71. PubMed ID: 15381313
[TBL] [Abstract][Full Text] [Related]
4. The competition between protein folding and aggregation: off-lattice minimalist model studies.
Cellmer T; Bratko D; Prausnitz JM; Blanch H
Biotechnol Bioeng; 2005 Jan; 89(1):78-87. PubMed ID: 15540197
[TBL] [Abstract][Full Text] [Related]
5. Sequential barriers and an obligatory metastable intermediate define the apparent two-state folding pathway of the ubiquitin-like PB1 domain of NBR1.
Chen P; Long J; Searle MS
J Mol Biol; 2008 Mar; 376(5):1463-77. PubMed ID: 18234223
[TBL] [Abstract][Full Text] [Related]
6. Aromatic residues engineered into the beta-turn nucleation site of ubiquitin lead to a complex folding landscape, non-native side-chain interactions, and kinetic traps.
Rea AM; Simpson ER; Meldrum JK; Williams HE; Searle MS
Biochemistry; 2008 Dec; 47(48):12910-22. PubMed ID: 18991391
[TBL] [Abstract][Full Text] [Related]
7. raf RBD and ubiquitin proteins share similar folds, folding rates and mechanisms despite having unrelated amino acid sequences.
Vallée-Bélisle A; Turcotte JF; Michnick SW
Biochemistry; 2004 Jul; 43(26):8447-58. PubMed ID: 15222756
[TBL] [Abstract][Full Text] [Related]
8. Kinetic studies of folding of the B-domain of staphylococcal protein A with molecular dynamics and a united-residue (UNRES) model of polypeptide chains.
Khalili M; Liwo A; Scheraga HA
J Mol Biol; 2006 Jan; 355(3):536-47. PubMed ID: 16324712
[TBL] [Abstract][Full Text] [Related]
9. Helix mutations stabilize a late productive intermediate on the folding pathway of ubiquitin.
Rea AM; Simpson ER; Crespo MD; Searle MS
Biochemistry; 2008 Aug; 47(31):8225-36. PubMed ID: 18616284
[TBL] [Abstract][Full Text] [Related]
10. New force replica exchange method and protein folding pathways probed by force-clamp technique.
Kouza M; Hu CK; Li MS
J Chem Phys; 2008 Jan; 128(4):045103. PubMed ID: 18248010
[TBL] [Abstract][Full Text] [Related]
11. Free energy landscape of protein folding in water: explicit vs. implicit solvent.
Zhou R
Proteins; 2003 Nov; 53(2):148-61. PubMed ID: 14517967
[TBL] [Abstract][Full Text] [Related]
12. Folding kinetics of a lattice protein via a forward flux sampling approach.
Borrero EE; Escobedo FA
J Chem Phys; 2006 Oct; 125(16):164904. PubMed ID: 17092136
[TBL] [Abstract][Full Text] [Related]
13. Discerning the structure and energy of multiple transition states in protein folding using psi-analysis.
Krantz BA; Dothager RS; Sosnick TR
J Mol Biol; 2004 Mar; 337(2):463-75. PubMed ID: 15003460
[TBL] [Abstract][Full Text] [Related]
14. A lattice protein with an amyloidogenic latent state: stability and folding kinetics.
Palyanov AY; Krivov SV; Karplus M; Chekmarev SF
J Phys Chem B; 2007 Mar; 111(10):2675-87. PubMed ID: 17315918
[TBL] [Abstract][Full Text] [Related]
15. Temperature-dependent downhill unfolding of ubiquitin. II. Modeling the free energy surface.
Chung HS; Tokmakoff A
Proteins; 2008 Jul; 72(1):488-97. PubMed ID: 18384149
[TBL] [Abstract][Full Text] [Related]
16. Folding of a model three-helix bundle protein: a thermodynamic and kinetic analysis.
Zhou Y; Karplus M
J Mol Biol; 1999 Nov; 293(4):917-51. PubMed ID: 10543976
[TBL] [Abstract][Full Text] [Related]
17. The complex folding pathways of protein A suggest a multiple-funnelled energy landscape.
St-Pierre JF; Mousseau N; Derreumaux P
J Chem Phys; 2008 Jan; 128(4):045101. PubMed ID: 18248008
[TBL] [Abstract][Full Text] [Related]
18. Fluctuations of primary ubiquitin folding intermediates in a force clamp.
Gräter F; Grubmüller H
J Struct Biol; 2007 Mar; 157(3):557-69. PubMed ID: 17306561
[TBL] [Abstract][Full Text] [Related]
19. Characterization of the folding kinetics of a three-helix bundle protein via a minimalist Langevin model.
Berriz GF; Shakhnovich EI
J Mol Biol; 2001 Jul; 310(3):673-85. PubMed ID: 11439031
[TBL] [Abstract][Full Text] [Related]
20. Optimal combination of theory and experiment for the characterization of the protein folding landscape of S6: how far can a minimalist model go?
Matysiak S; Clementi C
J Mol Biol; 2004 Oct; 343(1):235-48. PubMed ID: 15381433
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
