BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

225 related articles for article (PubMed ID: 11861921)

  • 1. BALSA: Bayesian algorithm for local sequence alignment.
    Webb BJ; Liu JS; Lawrence CE
    Nucleic Acids Res; 2002 Mar; 30(5):1268-77. PubMed ID: 11861921
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Bayesian adaptive sequence alignment algorithms.
    Zhu J; Liu JS; Lawrence CE
    Bioinformatics; 1998; 14(1):25-39. PubMed ID: 9520499
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Performance evaluation of a new algorithm for the detection of remote homologs with sequence comparison.
    Kann MG; Goldstein RA
    Proteins; 2002 Aug; 48(2):367-76. PubMed ID: 12112703
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Optimizing amino acid substitution matrices with a local alignment kernel.
    Saigo H; Vert JP; Akutsu T
    BMC Bioinformatics; 2006 May; 7():246. PubMed ID: 16677385
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Bayesian adaptive alignment and inference.
    Zhu J; Liu J; Lawrence C
    Proc Int Conf Intell Syst Mol Biol; 1997; 5():358-68. PubMed ID: 9322062
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparison of methods for searching protein sequence databases.
    Pearson WR
    Protein Sci; 1995 Jun; 4(6):1145-60. PubMed ID: 7549879
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
    Wallqvist A; Fukunishi Y; Murphy LR; Fadel A; Levy RM
    Bioinformatics; 2000 Nov; 16(11):988-1002. PubMed ID: 11159310
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Adjusting scoring matrices to correct overextended alignments.
    Mills LJ; Pearson WR
    Bioinformatics; 2013 Dec; 29(23):3007-13. PubMed ID: 23995390
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Database search based on Bayesian alignment.
    Zhu J; Lüthy R; Lawrence CE
    Proc Int Conf Intell Syst Mol Biol; 1999; ():297-305. PubMed ID: 10786313
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
    Ndhlovu A; Hazelhurst S; Durand PM
    BMC Bioinformatics; 2015 Aug; 16():255. PubMed ID: 26269100
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Adaptive Smith-Waterman residue match seeding for protein structural alignment.
    Topham CM; Rouquier M; Tarrat N; André I
    Proteins; 2013 Oct; 81(10):1823-39. PubMed ID: 23720362
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments.
    Wang C; Yan RX; Wang XF; Si JN; Zhang Z
    Comput Biol Chem; 2011 Oct; 35(5):308-18. PubMed ID: 22000802
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Scoring profile-to-profile sequence alignments.
    Wang G; Dunbrack RL
    Protein Sci; 2004 Jun; 13(6):1612-26. PubMed ID: 15152092
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Learning scoring schemes for sequence alignment from partial examples.
    Kim E; Kececioglu J
    IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(4):546-56. PubMed ID: 18989042
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Contact-based sequence alignment.
    Kleinjung J; Romein J; Lin K; Heringa J
    Nucleic Acids Res; 2004; 32(8):2464-73. PubMed ID: 15121903
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Optimization of a new score function for the generation of accurate alignments.
    Qian B; Goldstein RA
    Proteins; 2002 Sep; 48(4):605-10. PubMed ID: 12211027
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
    Huang YM; Bystroff C
    Bioinformatics; 2006 Feb; 22(4):413-22. PubMed ID: 16352653
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities.
    Roshan U; Chikkagoudar S; Livesay DR
    BMC Bioinformatics; 2008 Jan; 9():61. PubMed ID: 18226231
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SVM-BALSA: remote homology detection based on Bayesian sequence alignment.
    Webb-Robertson BJ; Oehmen C; Matzke M
    Comput Biol Chem; 2005 Dec; 29(6):440-3. PubMed ID: 16290168
    [TBL] [Abstract][Full Text] [Related]  

  • 20. From analysis of protein structural alignments toward a novel approach to align protein sequences.
    Sunyaev SR; Bogopolsky GA; Oleynikova NV; Vlasov PK; Finkelstein AV; Roytberg MA
    Proteins; 2004 Feb; 54(3):569-82. PubMed ID: 14748004
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.