225 related articles for article (PubMed ID: 11861921)
1. BALSA: Bayesian algorithm for local sequence alignment.
Webb BJ; Liu JS; Lawrence CE
Nucleic Acids Res; 2002 Mar; 30(5):1268-77. PubMed ID: 11861921
[TBL] [Abstract][Full Text] [Related]
2. Bayesian adaptive sequence alignment algorithms.
Zhu J; Liu JS; Lawrence CE
Bioinformatics; 1998; 14(1):25-39. PubMed ID: 9520499
[TBL] [Abstract][Full Text] [Related]
3. Performance evaluation of a new algorithm for the detection of remote homologs with sequence comparison.
Kann MG; Goldstein RA
Proteins; 2002 Aug; 48(2):367-76. PubMed ID: 12112703
[TBL] [Abstract][Full Text] [Related]
4. Optimizing amino acid substitution matrices with a local alignment kernel.
Saigo H; Vert JP; Akutsu T
BMC Bioinformatics; 2006 May; 7():246. PubMed ID: 16677385
[TBL] [Abstract][Full Text] [Related]
5. Bayesian adaptive alignment and inference.
Zhu J; Liu J; Lawrence C
Proc Int Conf Intell Syst Mol Biol; 1997; 5():358-68. PubMed ID: 9322062
[TBL] [Abstract][Full Text] [Related]
6. Comparison of methods for searching protein sequence databases.
Pearson WR
Protein Sci; 1995 Jun; 4(6):1145-60. PubMed ID: 7549879
[TBL] [Abstract][Full Text] [Related]
7. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
Wallqvist A; Fukunishi Y; Murphy LR; Fadel A; Levy RM
Bioinformatics; 2000 Nov; 16(11):988-1002. PubMed ID: 11159310
[TBL] [Abstract][Full Text] [Related]
8. Adjusting scoring matrices to correct overextended alignments.
Mills LJ; Pearson WR
Bioinformatics; 2013 Dec; 29(23):3007-13. PubMed ID: 23995390
[TBL] [Abstract][Full Text] [Related]
9. Database search based on Bayesian alignment.
Zhu J; Lüthy R; Lawrence CE
Proc Int Conf Intell Syst Mol Biol; 1999; ():297-305. PubMed ID: 10786313
[TBL] [Abstract][Full Text] [Related]
10. Robust sequence alignment using evolutionary rates coupled with an amino acid substitution matrix.
Ndhlovu A; Hazelhurst S; Durand PM
BMC Bioinformatics; 2015 Aug; 16():255. PubMed ID: 26269100
[TBL] [Abstract][Full Text] [Related]
11. Adaptive Smith-Waterman residue match seeding for protein structural alignment.
Topham CM; Rouquier M; Tarrat N; André I
Proteins; 2013 Oct; 81(10):1823-39. PubMed ID: 23720362
[TBL] [Abstract][Full Text] [Related]
12. Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments.
Wang C; Yan RX; Wang XF; Si JN; Zhang Z
Comput Biol Chem; 2011 Oct; 35(5):308-18. PubMed ID: 22000802
[TBL] [Abstract][Full Text] [Related]
13. Scoring profile-to-profile sequence alignments.
Wang G; Dunbrack RL
Protein Sci; 2004 Jun; 13(6):1612-26. PubMed ID: 15152092
[TBL] [Abstract][Full Text] [Related]
14. Learning scoring schemes for sequence alignment from partial examples.
Kim E; Kececioglu J
IEEE/ACM Trans Comput Biol Bioinform; 2008; 5(4):546-56. PubMed ID: 18989042
[TBL] [Abstract][Full Text] [Related]
15. Contact-based sequence alignment.
Kleinjung J; Romein J; Lin K; Heringa J
Nucleic Acids Res; 2004; 32(8):2464-73. PubMed ID: 15121903
[TBL] [Abstract][Full Text] [Related]
16. Optimization of a new score function for the generation of accurate alignments.
Qian B; Goldstein RA
Proteins; 2002 Sep; 48(4):605-10. PubMed ID: 12211027
[TBL] [Abstract][Full Text] [Related]
17. Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
Huang YM; Bystroff C
Bioinformatics; 2006 Feb; 22(4):413-22. PubMed ID: 16352653
[TBL] [Abstract][Full Text] [Related]
18. Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities.
Roshan U; Chikkagoudar S; Livesay DR
BMC Bioinformatics; 2008 Jan; 9():61. PubMed ID: 18226231
[TBL] [Abstract][Full Text] [Related]
19. SVM-BALSA: remote homology detection based on Bayesian sequence alignment.
Webb-Robertson BJ; Oehmen C; Matzke M
Comput Biol Chem; 2005 Dec; 29(6):440-3. PubMed ID: 16290168
[TBL] [Abstract][Full Text] [Related]
20. From analysis of protein structural alignments toward a novel approach to align protein sequences.
Sunyaev SR; Bogopolsky GA; Oleynikova NV; Vlasov PK; Finkelstein AV; Roytberg MA
Proteins; 2004 Feb; 54(3):569-82. PubMed ID: 14748004
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]