These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
7. Pair hidden Markov models on tree structures. Sakakibara Y Bioinformatics; 2003; 19 Suppl 1():i232-40. PubMed ID: 12855464 [TBL] [Abstract][Full Text] [Related]
8. Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots. Song Y; Liu C; Malmberg RL; He C; Cai L Int J Bioinform Res Appl; 2006; 2(3):289-304. PubMed ID: 18048167 [TBL] [Abstract][Full Text] [Related]
10. Evaluation of a sophisticated SCFG design for RNA secondary structure prediction. Nebel ME; Scheid A Theory Biosci; 2011 Dec; 130(4):313-36. PubMed ID: 22135038 [TBL] [Abstract][Full Text] [Related]
11. CONTRAfold: RNA secondary structure prediction without physics-based models. Do CB; Woods DA; Batzoglou S Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527 [TBL] [Abstract][Full Text] [Related]
12. RNA secondary structure prediction using stochastic context-free grammars and evolutionary history. Knudsen B; Hein J Bioinformatics; 1999 Jun; 15(6):446-54. PubMed ID: 10383470 [TBL] [Abstract][Full Text] [Related]
13. Characterising RNA secondary structure space using information entropy. Sükösd Z; Knudsen B; Anderson JW; Novák A; Kjems J; Pedersen CN BMC Bioinformatics; 2013; 14 Suppl 2(Suppl 2):S22. PubMed ID: 23368905 [TBL] [Abstract][Full Text] [Related]
14. Stochastic context-free grammars for tRNA modeling. Sakakibara Y; Brown M; Hughey R; Mian IS; Sjölander K; Underwood RC; Haussler D Nucleic Acids Res; 1994 Nov; 22(23):5112-20. PubMed ID: 7800507 [TBL] [Abstract][Full Text] [Related]
15. Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints. Dowell RD; Eddy SR BMC Bioinformatics; 2006 Sep; 7():400. PubMed ID: 16952317 [TBL] [Abstract][Full Text] [Related]
16. RNA pseudoknot modeling using intersections of stochastic context free grammars with applications to database search. Brown M; Wilson C Pac Symp Biocomput; 1996; ():109-25. PubMed ID: 9390227 [TBL] [Abstract][Full Text] [Related]
17. Stochastic modeling of RNA pseudoknotted structures: a grammatical approach. Cai L; Malmberg RL; Wu Y Bioinformatics; 2003; 19 Suppl 1():i66-73. PubMed ID: 12855439 [TBL] [Abstract][Full Text] [Related]
18. Small subunit ribosomal RNA modeling using stochastic context-free grammars. Brown MP Proc Int Conf Intell Syst Mol Biol; 2000; 8():57-66. PubMed ID: 10977066 [TBL] [Abstract][Full Text] [Related]
19. Computational analysis of RNAs. Eddy SR Cold Spring Harb Symp Quant Biol; 2006; 71():117-28. PubMed ID: 17381287 [TBL] [Abstract][Full Text] [Related]