These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
366 related articles for article (PubMed ID: 11955005)
1. RNA simulations: probing hairpin unfolding and the dynamics of a GNRA tetraloop. Sorin EJ; Engelhardt MA; Herschlag D; Pande VS J Mol Biol; 2002 Apr; 317(4):493-506. PubMed ID: 11955005 [TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics simulation of the structure, dynamics, and thermostability of the RNA hairpins uCACGg and cUUCGg. Villa A; Widjajakusuma E; Stock G J Phys Chem B; 2008 Jan; 112(1):134-42. PubMed ID: 18069816 [TBL] [Abstract][Full Text] [Related]
3. Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding. Csaszar K; Spacková N; Stefl R; Sponer J; Leontis NB J Mol Biol; 2001 Nov; 313(5):1073-91. PubMed ID: 11700064 [TBL] [Abstract][Full Text] [Related]
4. All-atom Monte Carlo simulation of GCAA RNA folding. Nivón LG; Shakhnovich EI J Mol Biol; 2004 Nov; 344(1):29-45. PubMed ID: 15504400 [TBL] [Abstract][Full Text] [Related]
5. Dynamics and stability of GCAA tetraloops with 2-aminopurine and purine substitutions. Sarzynska J; Kulinski T J Biomol Struct Dyn; 2005 Feb; 22(4):425-39. PubMed ID: 15588106 [TBL] [Abstract][Full Text] [Related]
6. Beta-hairpin folding simulations in atomistic detail using an implicit solvent model. Zagrovic B; Sorin EJ; Pande V J Mol Biol; 2001 Oct; 313(1):151-69. PubMed ID: 11601853 [TBL] [Abstract][Full Text] [Related]
7. A network of heterogeneous hydrogen bonds in GNRA tetraloops. Jucker FM; Heus HA; Yip PF; Moors EH; Pardi A J Mol Biol; 1996 Dec; 264(5):968-80. PubMed ID: 9000624 [TBL] [Abstract][Full Text] [Related]
8. Experimental and computational studies of the G[UUCG]C RNA tetraloop. Williams DJ; Hall KB J Mol Biol; 2000 Apr; 297(5):1045-61. PubMed ID: 10764572 [TBL] [Abstract][Full Text] [Related]
9. A novel RNA motif based on the structure of unusually stable 2',5'-linked r(UUCG) loops. Denisov AY; Hannoush RN; Gehring K; Damha MJ J Am Chem Soc; 2003 Sep; 125(38):11525-31. PubMed ID: 13129354 [TBL] [Abstract][Full Text] [Related]
10. Simulation of the pressure and temperature folding/unfolding equilibrium of a small RNA hairpin. Garcia AE; Paschek D J Am Chem Soc; 2008 Jan; 130(3):815-7. PubMed ID: 18154332 [TBL] [Abstract][Full Text] [Related]
11. A quadruple mutant T4 RNA hairpin with the same structure as the wild-type translational repressor. Mirmira SR; Tinoco I Biochemistry; 1996 Jun; 35(24):7675-83. PubMed ID: 8672468 [TBL] [Abstract][Full Text] [Related]
12. Evidence that folding of an RNA tetraloop hairpin is less cooperative than its DNA counterpart. Moody EM; Feerrar JC; Bevilacqua PC Biochemistry; 2004 Jun; 43(25):7992-8. PubMed ID: 15209494 [TBL] [Abstract][Full Text] [Related]
13. Portability of the GN(R)A hairpin loop motif between RNA and DNA. Blose JM; Lloyd KP; Bevilacqua PC Biochemistry; 2009 Sep; 48(37):8787-94. PubMed ID: 19681609 [TBL] [Abstract][Full Text] [Related]
14. Molecular dynamics simulations of the denaturation and refolding of an RNA tetraloop. Li W; Ma B; Shapiro B J Biomol Struct Dyn; 2001 Dec; 19(3):381-96. PubMed ID: 11790138 [TBL] [Abstract][Full Text] [Related]
15. Dynamic behavior of the telomerase RNA hairpin structure and its relationship to dyskeratosis congenita. Yingling YG; Shapiro BA J Mol Biol; 2005 Apr; 348(1):27-42. PubMed ID: 15808851 [TBL] [Abstract][Full Text] [Related]
16. Structure and dynamics of an RNA tetraloop: a joint molecular dynamics and NMR study. Koplin J; Mu Y; Richter C; Schwalbe H; Stock G Structure; 2005 Sep; 13(9):1255-67. PubMed ID: 16154083 [TBL] [Abstract][Full Text] [Related]
17. Experimental and theoretical studies of the effects of deoxyribose substitutions on the stability of the UUCG tetraloop. Williams DJ; Hall KB J Mol Biol; 2000 Mar; 297(1):251-65. PubMed ID: 10704320 [TBL] [Abstract][Full Text] [Related]
18. beta-hairpin folding and stability: molecular dynamics simulations of designed peptides in aqueous solution. Santiveri CM; Jiménez MA; Rico M; Van Gunsteren WF; Daura X J Pept Sci; 2004 Sep; 10(9):546-65. PubMed ID: 15473263 [TBL] [Abstract][Full Text] [Related]
19. A molecular dynamics simulation of the flavin mononucleotide-RNA aptamer complex. Schneider C; Sühnel J Biopolymers; 1999 Sep; 50(3):287-302. PubMed ID: 10397790 [TBL] [Abstract][Full Text] [Related]
20. Thermal unfolding simulations of apo-calmodulin using leap-dynamics. Kleinjung J; Fraternali F; Martin SR; Bayley PM Proteins; 2003 Mar; 50(4):648-56. PubMed ID: 12577271 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]