119 related articles for article (PubMed ID: 11997349)
1. RePS: a sequence assembler that masks exact repeats identified from the shotgun data.
Wang J; Wong GK; Ni P; Han Y; Huang X; Zhang J; Ye C; Zhang Y; Hu J; Zhang K; Xu X; Cong L; Lu H; Ren X; Ren X; He J; Tao L; Passey DA; Wang J; Yang H; Yu J; Li S
Genome Res; 2002 May; 12(5):824-31. PubMed ID: 11997349
[TBL] [Abstract][Full Text] [Related]
2. De novo repeat classification and fragment assembly.
Pevzner PA; Tang H; Tesler G
Genome Res; 2004 Sep; 14(9):1786-96. PubMed ID: 15342561
[TBL] [Abstract][Full Text] [Related]
3. Structure and evolution of the Smith-Magenis syndrome repeat gene clusters, SMS-REPs.
Park SS; Stankiewicz P; Bi W; Shaw C; Lehoczky J; Dewar K; Birren B; Lupski JR
Genome Res; 2002 May; 12(5):729-38. PubMed ID: 11997339
[TBL] [Abstract][Full Text] [Related]
4. Assembly of chromosome-scale contigs by efficiently resolving repetitive sequences with long reads.
Du H; Liang C
Nat Commun; 2019 Nov; 10(1):5360. PubMed ID: 31767853
[TBL] [Abstract][Full Text] [Related]
5. AMASS: a structured pattern matching approach to shotgun sequence assembly.
Kim S; Segre AM
J Comput Biol; 1999; 6(2):163-86. PubMed ID: 10421521
[TBL] [Abstract][Full Text] [Related]
6. HINGE: long-read assembly achieves optimal repeat resolution.
Kamath GM; Shomorony I; Xia F; Courtade TA; Tse DN
Genome Res; 2017 May; 27(5):747-756. PubMed ID: 28320918
[TBL] [Abstract][Full Text] [Related]
7. OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees.
Gao S; Bertrand D; Chia BK; Nagarajan N
Genome Biol; 2016 May; 17():102. PubMed ID: 27169502
[TBL] [Abstract][Full Text] [Related]
8. Repeat-aware evaluation of scaffolding tools.
Mandric I; Knyazev S; Zelikovsky A
Bioinformatics; 2018 Aug; 34(15):2530-2537. PubMed ID: 29547882
[TBL] [Abstract][Full Text] [Related]
9. A statistical approach designed for finding mathematically defined repeats in shotgun data and determining the length distribution of clone-inserts.
Zhong L; Zhang K; Huang X; Ni P; Han Y; Wang K; Wang J; Li S
Genomics Proteomics Bioinformatics; 2003 Feb; 1(1):43-51. PubMed ID: 15626332
[TBL] [Abstract][Full Text] [Related]
10. Canu: scalable and accurate long-read assembly via adaptive
Koren S; Walenz BP; Berlin K; Miller JR; Bergman NH; Phillippy AM
Genome Res; 2017 May; 27(5):722-736. PubMed ID: 28298431
[TBL] [Abstract][Full Text] [Related]
11. OSLay: optimal syntenic layout of unfinished assemblies.
Richter DC; Schuster SC; Huson DH
Bioinformatics; 2007 Jul; 23(13):1573-9. PubMed ID: 17463020
[TBL] [Abstract][Full Text] [Related]
12. Facilitated sequence assembly using densely labeled optical DNA barcodes: A combinatorial auction approach.
Dvirnas A; Pichler C; Stewart CL; Quaderi S; Nyberg LK; Müller V; Kumar Bikkarolla S; Kristiansson E; Sandegren L; Westerlund F; Ambjörnsson T
PLoS One; 2018; 13(3):e0193900. PubMed ID: 29522539
[TBL] [Abstract][Full Text] [Related]
13. Misassembly detection using paired-end sequence reads and optical mapping data.
Muggli MD; Puglisi SJ; Ronen R; Boucher C
Bioinformatics; 2015 Jun; 31(12):i80-8. PubMed ID: 26072512
[TBL] [Abstract][Full Text] [Related]
14. CAP3: A DNA sequence assembly program.
Huang X; Madan A
Genome Res; 1999 Sep; 9(9):868-77. PubMed ID: 10508846
[TBL] [Abstract][Full Text] [Related]
15. Hierarchical scaffolding with Bambus.
Pop M; Kosack DS; Salzberg SL
Genome Res; 2004 Jan; 14(1):149-59. PubMed ID: 14707177
[TBL] [Abstract][Full Text] [Related]
16. Sequencing of difficult templates containing poly(A/T) tracts: closure of sequence gaps.
Langan JE; Rowbottom L; Liloglou T; Field JK; Risk JM
Biotechniques; 2002 Aug; 33(2):276, 278, 280. PubMed ID: 12188175
[No Abstract] [Full Text] [Related]
17. Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler.
Zerbino DR; McEwen GK; Margulies EH; Birney E
PLoS One; 2009 Dec; 4(12):e8407. PubMed ID: 20027311
[TBL] [Abstract][Full Text] [Related]
18. Heterozygous genome assembly via binary classification of homologous sequence.
Bodily PM; Fujimoto M; Ortega C; Okuda N; Price JC; Clement MJ; Snell Q
BMC Bioinformatics; 2015; 16 Suppl 7(Suppl 7):S5. PubMed ID: 25952609
[TBL] [Abstract][Full Text] [Related]
19. A repetitive sequence assembler based on next-generation sequencing.
Lian S; Tu Y; Wang Y; Chen X; Wang L
Genet Mol Res; 2016 Jul; 15(3):. PubMed ID: 27525861
[TBL] [Abstract][Full Text] [Related]
20. SLIQ: simple linear inequalities for efficient contig scaffolding.
Roy RS; Chen KC; Sengupta AM; Schliep A
J Comput Biol; 2012 Oct; 19(10):1162-75. PubMed ID: 23057825
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
