235 related articles for article (PubMed ID: 12015879)
1. Finding motifs using random projections.
Buhler J; Tompa M
J Comput Biol; 2002; 9(2):225-42. PubMed ID: 12015879
[TBL] [Abstract][Full Text] [Related]
2. An extension and novel solution to the (l,d)-motif challenge problem.
Styczynski MP; Jensen KL; Rigoutsos I; Stephanopoulos GN
Genome Inform; 2004; 15(2):63-71. PubMed ID: 15706492
[TBL] [Abstract][Full Text] [Related]
3. A uniform projection method for motif discovery in DNA sequences.
Raphael B; Liu LT; Varghese G
IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(2):91-4. PubMed ID: 17048384
[TBL] [Abstract][Full Text] [Related]
4. Algorithms for challenging motif problems.
Leung HC; Chin FY
J Bioinform Comput Biol; 2006 Feb; 4(1):43-58. PubMed ID: 16568541
[TBL] [Abstract][Full Text] [Related]
5. PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
Siddharthan R; Siggia ED; van Nimwegen E
PLoS Comput Biol; 2005 Dec; 1(7):e67. PubMed ID: 16477324
[TBL] [Abstract][Full Text] [Related]
6. Hybrid Gibbs-sampling algorithm for challenging motif discovery: GibbsDST.
Shida K
Genome Inform; 2006; 17(2):3-13. PubMed ID: 17503374
[TBL] [Abstract][Full Text] [Related]
7. MUSA: a parameter free algorithm for the identification of biologically significant motifs.
Mendes ND; Casimiro AC; Santos PM; Sá-Correia I; Oliveira AL; Freitas AT
Bioinformatics; 2006 Dec; 22(24):2996-3002. PubMed ID: 17068086
[TBL] [Abstract][Full Text] [Related]
8. Voting algorithms for the motif finding problem.
Liu X; Ma B; Wang L
Comput Syst Bioinformatics Conf; 2008; 7():37-47. PubMed ID: 19642267
[TBL] [Abstract][Full Text] [Related]
9. MotifCut: regulatory motifs finding with maximum density subgraphs.
Fratkin E; Naughton BT; Brutlag DL; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e150-7. PubMed ID: 16873465
[TBL] [Abstract][Full Text] [Related]
10. A cluster refinement algorithm for motif discovery.
Li G; Chan TM; Leung KS; Lee KH
IEEE/ACM Trans Comput Biol Bioinform; 2010; 7(4):654-68. PubMed ID: 21030733
[TBL] [Abstract][Full Text] [Related]
11. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
Liu XS; Brutlag DL; Liu JS
Nat Biotechnol; 2002 Aug; 20(8):835-9. PubMed ID: 12101404
[TBL] [Abstract][Full Text] [Related]
12. cWINNOWER algorithm for finding fuzzy DNA motifs.
Liang S
Proc IEEE Comput Soc Bioinform Conf; 2003; 2():260-5. PubMed ID: 16452801
[TBL] [Abstract][Full Text] [Related]
13. On counting position weight matrix matches in a sequence, with application to discriminative motif finding.
Sinha S
Bioinformatics; 2006 Jul; 22(14):e454-63. PubMed ID: 16873507
[TBL] [Abstract][Full Text] [Related]
14. Discriminative motif discovery in DNA and protein sequences using the DEME algorithm.
Redhead E; Bailey TL
BMC Bioinformatics; 2007 Oct; 8():385. PubMed ID: 17937785
[TBL] [Abstract][Full Text] [Related]
15. An improved heuristic algorithm for finding motif signals in DNA sequences.
Huang CW; Lee WS; Hsieh SY
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(4):959-75. PubMed ID: 20855921
[TBL] [Abstract][Full Text] [Related]
16. Memetic algorithms for de novo motif-finding in biomedical sequences.
Bi C
Artif Intell Med; 2012 Sep; 56(1):1-17. PubMed ID: 22613029
[TBL] [Abstract][Full Text] [Related]
17. An Efficient Algorithm for Discovering Motifs in Large DNA Data Sets.
Yu Q; Huo H; Chen X; Guo H; Vitter JS; Huan J
IEEE Trans Nanobioscience; 2015 Jul; 14(5):535-44. PubMed ID: 25872217
[TBL] [Abstract][Full Text] [Related]
18. Motif finding in DNA sequences based on skipping nonconserved positions in background Markov chains.
Zhao X; Sze SH
J Comput Biol; 2011 May; 18(5):759-70. PubMed ID: 21554019
[TBL] [Abstract][Full Text] [Related]
19. Finding motifs from all sequences with and without binding sites.
Leung HC; Chin FY
Bioinformatics; 2006 Sep; 22(18):2217-23. PubMed ID: 16870937
[TBL] [Abstract][Full Text] [Related]
20. RankMotif++: a motif-search algorithm that accounts for relative ranks of K-mers in binding transcription factors.
Chen X; Hughes TR; Morris Q
Bioinformatics; 2007 Jul; 23(13):i72-9. PubMed ID: 17646348
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
