These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

164 related articles for article (PubMed ID: 12061783)

  • 1. Human secretory signal peptide description by hidden Markov model and generation of a strong artificial signal peptide for secreted protein expression.
    Barash S; Wang W; Shi Y
    Biochem Biophys Res Commun; 2002 Jun; 294(4):835-42. PubMed ID: 12061783
    [TBL] [Abstract][Full Text] [Related]  

  • 2. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences.
    Srivastava PK; Desai DK; Nandi S; Lynn AM
    BMC Bioinformatics; 2007 Mar; 8():104. PubMed ID: 17389042
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Artificial signal peptide prediction by a hidden markov model to improve protein secretion via Lactococcus lactis bacteria.
    Razmara J; Deris SB; Illias RB; Parvizpour S
    Bioinformation; 2013; 9(7):345-8. PubMed ID: 23750078
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An HMM posterior decoder for sequence feature prediction that includes homology information.
    Käll L; Krogh A; Sonnhammer EL
    Bioinformatics; 2005 Jun; 21 Suppl 1():i251-7. PubMed ID: 15961464
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Sequence-based protein structure prediction using a reduced state-space hidden Markov model.
    Lampros C; Costas Papaloukas ; Exarchos TP; Yorgos Goletsis ; Fotiadis DI
    Comput Biol Med; 2007 Sep; 37(9):1211-24. PubMed ID: 17161834
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Prediction of lipoprotein signal peptides in Gram-positive bacteria with a Hidden Markov Model.
    Bagos PG; Tsirigos KD; Liakopoulos TD; Hamodrakas SJ
    J Proteome Res; 2008 Dec; 7(12):5082-93. PubMed ID: 19367716
    [TBL] [Abstract][Full Text] [Related]  

  • 7. High-efficiency secretory production of peroxidase C1a using vesicular transport engineering in transgenic tobacco.
    Matsui T; Hori M; Shizawa N; Nakayama H; Shinmyo A; Yoshida K
    J Biosci Bioeng; 2006 Aug; 102(2):102-9. PubMed ID: 17027871
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A combined transmembrane topology and signal peptide prediction method.
    Käll L; Krogh A; Sonnhammer EL
    J Mol Biol; 2004 May; 338(5):1027-36. PubMed ID: 15111065
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genetic screen for signal peptides in Hydra reveals novel secreted proteins and evidence for non-classical protein secretion.
    Böttger A; Strasser D; Alexandrova O; Levin A; Fischer S; Lasi M; Rudd S; David CN
    Eur J Cell Biol; 2006 Sep; 85(9-10):1107-17. PubMed ID: 16814424
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Prediction of ubiquitin proteins using artificial neural networks, hidden markov model and support vector machines.
    Jaiswal K
    In Silico Biol; 2007; 7(6):559-68. PubMed ID: 18467768
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Calibrating E-values for hidden Markov models using reverse-sequence null models.
    Karplus K; Karchin R; Shackelford G; Hughey R
    Bioinformatics; 2005 Nov; 21(22):4107-15. PubMed ID: 16123115
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.
    Bagos PG; Liakopoulos TD; Spyropoulos IC; Hamodrakas SJ
    BMC Bioinformatics; 2004 Mar; 5():29. PubMed ID: 15070403
    [TBL] [Abstract][Full Text] [Related]  

  • 13. NovoHMM: a hidden Markov model for de novo peptide sequencing.
    Fischer B; Roth V; Roos F; Grossmann J; Baginsky S; Widmayer P; Gruissem W; Buhmann JM
    Anal Chem; 2005 Nov; 77(22):7265-73. PubMed ID: 16285674
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Computational prediction of the functional effects of amino acid substitutions in signal peptides using a model-based approach.
    Hon LS; Zhang Y; Kaminker JS; Zhang Z
    Hum Mutat; 2009 Jan; 30(1):99-106. PubMed ID: 18570327
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Maximum confidence hidden markov modeling for face recognition.
    Chien JT; Liao CP
    IEEE Trans Pattern Anal Mach Intell; 2008 Apr; 30(4):606-16. PubMed ID: 18276967
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Similarity in cyst wall protein (CWP) trafficking between encysting Giardia duodenalis trophozoites and CWP-expressing human embryonic kidney-293 cells.
    Abdul-Wahid A; Faubert GM
    Biochem Biophys Res Commun; 2004 Nov; 324(3):1069-80. PubMed ID: 15485664
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Combined prediction of Tat and Sec signal peptides with hidden Markov models.
    Bagos PG; Nikolaou EP; Liakopoulos TD; Tsirigos KD
    Bioinformatics; 2010 Nov; 26(22):2811-7. PubMed ID: 20847219
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SPRED: A machine learning approach for the identification of classical and non-classical secretory proteins in mammalian genomes.
    Kandaswamy KK; Pugalenthi G; Hartmann E; Kalies KU; Möller S; Suganthan PN; Martinetz T
    Biochem Biophys Res Commun; 2010 Jan; 391(3):1306-11. PubMed ID: 19995554
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Signal-3L: A 3-layer approach for predicting signal peptides.
    Shen HB; Chou KC
    Biochem Biophys Res Commun; 2007 Nov; 363(2):297-303. PubMed ID: 17880924
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Heterologous protein secretion by Lactobacillus plantarum using homologous signal peptides.
    Mathiesen G; Sveen A; Piard JC; Axelsson L; Eijsink VG
    J Appl Microbiol; 2008 Jul; 105(1):215-26. PubMed ID: 18298538
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.