495 related articles for article (PubMed ID: 12082130)
1. Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover.
Dermitzakis ET; Clark AG
Mol Biol Evol; 2002 Jul; 19(7):1114-21. PubMed ID: 12082130
[TBL] [Abstract][Full Text] [Related]
2. CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.
Berezikov E; Guryev V; Plasterk RH; Cuppen E
Genome Res; 2004 Jan; 14(1):170-8. PubMed ID: 14672977
[TBL] [Abstract][Full Text] [Related]
3. Comparative genomics and regulatory evolution: conservation and function of the Chs and Apetala3 promoters.
Koch MA; Weisshaar B; Kroymann J; Haubold B; Mitchell-Olds T
Mol Biol Evol; 2001 Oct; 18(10):1882-91. PubMed ID: 11557794
[TBL] [Abstract][Full Text] [Related]
4. Identification of conserved regulatory elements by comparative genome analysis.
Lenhard B; Sandelin A; Mendoza L; Engström P; Jareborg N; Wasserman WW
J Biol; 2003; 2(2):13. PubMed ID: 12760745
[TBL] [Abstract][Full Text] [Related]
5. WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
Pavesi G; Zambelli F; Pesole G
BMC Bioinformatics; 2007 Feb; 8():46. PubMed ID: 17286865
[TBL] [Abstract][Full Text] [Related]
6. Position specific variation in the rate of evolution in transcription factor binding sites.
Moses AM; Chiang DY; Kellis M; Lander ES; Eisen MB
BMC Evol Biol; 2003 Aug; 3():19. PubMed ID: 12946282
[TBL] [Abstract][Full Text] [Related]
7. Regulatory conservation of protein coding and microRNA genes in vertebrates: lessons from the opossum genome.
Mahony S; Corcoran DL; Feingold E; Benos PV
Genome Biol; 2007; 8(5):R84. PubMed ID: 17506886
[TBL] [Abstract][Full Text] [Related]
8. The tilapia prolactin I gene: evolutionary conservation of the regulatory elements directing pituitary-specific expression.
Poncelet AC; Levavi-Sivan B; Muller M; Yaron Z; Martial JA; Belayew A
DNA Cell Biol; 1996 Aug; 15(8):679-92. PubMed ID: 8769570
[TBL] [Abstract][Full Text] [Related]
9. Molecular and structural considerations of TF-DNA binding for the generation of biologically meaningful and accurate phylogenetic footprinting analysis: the LysR-type transcriptional regulator family as a study model.
Oliver P; Peralta-Gil M; Tabche ML; Merino E
BMC Genomics; 2016 Aug; 17(1):686. PubMed ID: 27567672
[TBL] [Abstract][Full Text] [Related]
10. Functional and phylogenetic analyses of a conserved regulatory program in the phloem of minor veins.
Ayre BG; Blair JE; Turgeon R
Plant Physiol; 2003 Nov; 133(3):1229-39. PubMed ID: 14526110
[TBL] [Abstract][Full Text] [Related]
11. Evaluating phylogenetic footprinting for human-rodent comparisons.
Sauer T; Shelest E; Wingender E
Bioinformatics; 2006 Feb; 22(4):430-7. PubMed ID: 16332706
[TBL] [Abstract][Full Text] [Related]
12. Frequent gain and loss of functional transcription factor binding sites.
Doniger SW; Fay JC
PLoS Comput Biol; 2007 May; 3(5):e99. PubMed ID: 17530920
[TBL] [Abstract][Full Text] [Related]
13. Comparative promoter region analysis powered by CORG.
Dieterich C; Grossmann S; Tanzer A; Röpcke S; Arndt PF; Stadler PF; Vingron M
BMC Genomics; 2005 Feb; 6():24. PubMed ID: 15723697
[TBL] [Abstract][Full Text] [Related]
14. Functional characterization of the human SOX3 promoter: identification of transcription factors implicated in basal promoter activity.
Kovacevic Grujicic N; Mojsin M; Krstic A; Stevanovic M
Gene; 2005 Jan; 344():287-97. PubMed ID: 15656994
[TBL] [Abstract][Full Text] [Related]
15. GAGA factor repression of transcription is a rare event but the negative regulation of Trl is conserved in Drosophila species.
Piñeyro D; Blanch M; Badal M; Kosoy A; Bernués J
Biochim Biophys Acta; 2013 Oct; 1829(10):1056-65. PubMed ID: 23860261
[TBL] [Abstract][Full Text] [Related]
16. Context specific transcription factor prediction.
Yang E; Simcha D; Almon RR; Dubois DC; Jusko WJ; Androulakis IP
Ann Biomed Eng; 2007 Jun; 35(6):1053-67. PubMed ID: 17377845
[TBL] [Abstract][Full Text] [Related]
17. Is transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence?
Venkataram S; Fay JC
Genome Biol Evol; 2010; 2():851-8. PubMed ID: 21068212
[TBL] [Abstract][Full Text] [Related]
18. The in vivo dissection of direct RFX-target gene promoters in C. elegans reveals a novel cis-regulatory element, the C-box.
Burghoorn J; Piasecki BP; Crona F; Phirke P; Jeppsson KE; Swoboda P
Dev Biol; 2012 Aug; 368(2):415-26. PubMed ID: 22683808
[TBL] [Abstract][Full Text] [Related]
19. Clusters of regulatory signals for RNA polymerase II transcription associated with Alu family repeats and CpG islands in human promoters.
Oei SL; Babich VS; Kazakov VI; Usmanova NM; Kropotov AV; Tomilin NV
Genomics; 2004 May; 83(5):873-82. PubMed ID: 15081116
[TBL] [Abstract][Full Text] [Related]
20. The Identification of Cis-Regulatory Sequence Motifs in Gene Promoters Based on SNP Information.
Korkuć P; Walther D
Methods Mol Biol; 2016; 1482():31-47. PubMed ID: 27557759
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
