121 related articles for article (PubMed ID: 12162893)
1. Estimating and evaluating the statistics of gapped local-alignment scores.
Bailey TL; Gribskov M
J Comput Biol; 2002; 9(3):575-93. PubMed ID: 12162893
[TBL] [Abstract][Full Text] [Related]
2. Accurate formula for P-values of gapped local sequence and profile alignments.
Mott R
J Mol Biol; 2000 Jul; 300(3):649-59. PubMed ID: 10884359
[TBL] [Abstract][Full Text] [Related]
3. Maximum-likelihood estimation of the statistical distribution of Smith-Waterman local sequence similarity scores.
Mott R
Bull Math Biol; 1992 Jan; 54(1):59-75. PubMed ID: 25665661
[TBL] [Abstract][Full Text] [Related]
4. Estimation of P-values for global alignments of protein sequences.
Webber C; Barton GJ
Bioinformatics; 2001 Dec; 17(12):1158-67. PubMed ID: 11751224
[TBL] [Abstract][Full Text] [Related]
5. Score statistics of global sequence alignment from the energy distribution of a modified directed polymer and directed percolation problem.
Sardiu ME; Alves G; Yu YK
Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Dec; 72(6 Pt 1):061917. PubMed ID: 16485984
[TBL] [Abstract][Full Text] [Related]
6. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
7. Toward an accurate statistics of gapped alignments.
Kschischo M; Lässig M; Yu YK
Bull Math Biol; 2005 Jan; 67(1):169-91. PubMed ID: 15691544
[TBL] [Abstract][Full Text] [Related]
8. Replica model for an unusual directed polymer in 1+1 dimensions and prediction of the extremal parameter of gapped sequence alignment statistics.
Yu YK
Phys Rev E Stat Nonlin Soft Matter Phys; 2004 Jun; 69(6 Pt 1):061904. PubMed ID: 15244614
[TBL] [Abstract][Full Text] [Related]
9. Approximate statistics of gapped alignments.
Mott R; Tribe R
J Comput Biol; 1999; 6(1):91-112. PubMed ID: 10223667
[TBL] [Abstract][Full Text] [Related]
10. Probalign: multiple sequence alignment using partition function posterior probabilities.
Roshan U; Livesay DR
Bioinformatics; 2006 Nov; 22(22):2715-21. PubMed ID: 16954142
[TBL] [Abstract][Full Text] [Related]
11. Calibrating E-values for hidden Markov models using reverse-sequence null models.
Karplus K; Karchin R; Shackelford G; Hughey R
Bioinformatics; 2005 Nov; 21(22):4107-15. PubMed ID: 16123115
[TBL] [Abstract][Full Text] [Related]
12. Statistical significance of normalized global alignment.
Peris G; Marzal A
J Comput Biol; 2014 Mar; 21(3):257-68. PubMed ID: 24400820
[TBL] [Abstract][Full Text] [Related]
13. Methods and statistics for combining motif match scores.
Bailey TL; Gribskov M
J Comput Biol; 1998; 5(2):211-21. PubMed ID: 9672829
[TBL] [Abstract][Full Text] [Related]
14. PicXAA: a probabilistic scheme for finding the maximum expected accuracy alignment of multiple biological sequences.
Sahraeian SM; Yoon BJ
Methods Mol Biol; 2014; 1079():203-10. PubMed ID: 24170404
[TBL] [Abstract][Full Text] [Related]
15. Statistical distributions of optimal global alignment scores of random protein sequences.
Pang H; Tang J; Chen SS; Tao S
BMC Bioinformatics; 2005 Oct; 6():257. PubMed ID: 16225696
[TBL] [Abstract][Full Text] [Related]
16. Application of a simple likelihood ratio approximant to protein sequence classification.
Kaján L; Kertész-Farkas A; Franklin D; Ivanova N; Kocsor A; Pongor S
Bioinformatics; 2006 Dec; 22(23):2865-9. PubMed ID: 17090576
[TBL] [Abstract][Full Text] [Related]
17. Island method for estimating the statistical significance of profile-profile alignment scores.
Poleksic A
BMC Bioinformatics; 2009 Apr; 10():112. PubMed ID: 19379500
[TBL] [Abstract][Full Text] [Related]
18. SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.
Liu K; Warnow TJ; Holder MT; Nelesen SM; Yu J; Stamatakis AP; Linder CR
Syst Biol; 2012 Jan; 61(1):90-106. PubMed ID: 22139466
[TBL] [Abstract][Full Text] [Related]
19. Accurate statistics for local sequence alignment with position-dependent scoring by rare-event sampling.
Wolfsheimer S; Herms I; Rahmann S; Hartmann AK
BMC Bioinformatics; 2011 Feb; 12():47. PubMed ID: 21291566
[TBL] [Abstract][Full Text] [Related]
20. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
Pei J; Cai W; Kinch LN; Grishin NV
Bioinformatics; 2006 Jan; 22(2):164-71. PubMed ID: 16278237
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]