These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
222 related articles for article (PubMed ID: 12163065)
1. Energy estimation in protein design. Mendes J; Guerois R; Serrano L Curr Opin Struct Biol; 2002 Aug; 12(4):441-6. PubMed ID: 12163065 [TBL] [Abstract][Full Text] [Related]
2. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space. Fromer M; Yanover C Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998 [TBL] [Abstract][Full Text] [Related]
3. Protein design is NP-hard. Pierce NA; Winfree E Protein Eng; 2002 Oct; 15(10):779-82. PubMed ID: 12468711 [TBL] [Abstract][Full Text] [Related]
4. Computational Protein Design Under a Given Backbone Structure with the ABACUS Statistical Energy Function. Xiong P; Chen Q; Liu H Methods Mol Biol; 2017; 1529():217-226. PubMed ID: 27914053 [TBL] [Abstract][Full Text] [Related]
5. Progress in computational protein design. Lippow SM; Tidor B Curr Opin Biotechnol; 2007 Aug; 18(4):305-11. PubMed ID: 17644370 [TBL] [Abstract][Full Text] [Related]
7. Incorporating receptor flexibility in the molecular design of protein interfaces. Li L; Liang S; Pilcher MM; Meroueh SO Protein Eng Des Sel; 2009 Sep; 22(9):575-86. PubMed ID: 19643976 [TBL] [Abstract][Full Text] [Related]
8. Computational protein design with electrostatic focusing: experimental characterization of a conditionally folded helical domain with a reduced amino acid alphabet. Suárez-Diez M; Pujol AM; Matzapetakis M; Jaramillo A; Iranzo O Biotechnol J; 2013 Jul; 8(7):855-64. PubMed ID: 23788466 [TBL] [Abstract][Full Text] [Related]
9. LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid Rotamer-Like Efficiency. Hallen MA; Jou JD; Donald BR J Comput Biol; 2017 Jun; 24(6):536-546. PubMed ID: 27681371 [TBL] [Abstract][Full Text] [Related]
10. PoPMuSiC, rationally designing point mutations in protein structures. Kwasigroch JM; Gilis D; Dehouck Y; Rooman M Bioinformatics; 2002 Dec; 18(12):1701-2. PubMed ID: 12490462 [TBL] [Abstract][Full Text] [Related]
11. Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design. Georgiev I; Lilien RH; Donald BR Bioinformatics; 2006 Jul; 22(14):e174-83. PubMed ID: 16873469 [TBL] [Abstract][Full Text] [Related]
12. Computer search algorithms in protein modification and design. Desjarlais JR; Clarke ND Curr Opin Struct Biol; 1998 Aug; 8(4):471-5. PubMed ID: 9729739 [TBL] [Abstract][Full Text] [Related]
13. A coarse-grained approach to protein design: learning from design to understand folding. Coluzza I PLoS One; 2011; 6(7):e20853. PubMed ID: 21747930 [TBL] [Abstract][Full Text] [Related]
14. Design of Protein Multi-specificity Using an Independent Sequence Search Reduces the Barrier to Low Energy Sequences. Sevy AM; Jacobs TM; Crowe JE; Meiler J PLoS Comput Biol; 2015 Jul; 11(7):e1004300. PubMed ID: 26147100 [TBL] [Abstract][Full Text] [Related]
15. A novel approach to decoy set generation: designing a physical energy function having local minima with native structure characteristics. Keasar C; Levitt M J Mol Biol; 2003 May; 329(1):159-74. PubMed ID: 12742025 [TBL] [Abstract][Full Text] [Related]
16. Deterministic Search Methods for Computational Protein Design. Traoré S; Allouche D; André I; Schiex T; Barbe S Methods Mol Biol; 2017; 1529():107-123. PubMed ID: 27914047 [TBL] [Abstract][Full Text] [Related]
17. Energy functions for protein design. Gordon DB; Marshall SA; Mayo SL Curr Opin Struct Biol; 1999 Aug; 9(4):509-13. PubMed ID: 10449371 [TBL] [Abstract][Full Text] [Related]
18. Force fields for protein simulations. Ponder JW; Case DA Adv Protein Chem; 2003; 66():27-85. PubMed ID: 14631816 [No Abstract] [Full Text] [Related]
19. Structure/function correlations of proteins using MM, QM/MM, and related approaches: methods, concepts, pitfalls, and current progress. Shurki A; Warshel A Adv Protein Chem; 2003; 66():249-313. PubMed ID: 14631821 [No Abstract] [Full Text] [Related]
20. Accurate positioning of functional residues with robotics-inspired computational protein design. Krivacic C; Kundert K; Pan X; Pache RA; Liu L; Conchúir SO; Jeliazkov JR; Gray JJ; Thompson MC; Fraser JS; Kortemme T Proc Natl Acad Sci U S A; 2022 Mar; 119(11):e2115480119. PubMed ID: 35254891 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]