302 related articles for article (PubMed ID: 12175808)
1. Genome trees and the tree of life.
Wolf YI; Rogozin IB; Grishin NV; Koonin EV
Trends Genet; 2002 Sep; 18(9):472-9. PubMed ID: 12175808
[TBL] [Abstract][Full Text] [Related]
2. Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.
Mirkin BG; Fenner TI; Galperin MY; Koonin EV
BMC Evol Biol; 2003 Jan; 3():2. PubMed ID: 12515582
[TBL] [Abstract][Full Text] [Related]
3. Genome trees constructed using five different approaches suggest new major bacterial clades.
Wolf YI; Rogozin IB; Grishin NV; Tatusov RL; Koonin EV
BMC Evol Biol; 2001 Oct; 1():8. PubMed ID: 11734060
[TBL] [Abstract][Full Text] [Related]
4. Search for a 'Tree of Life' in the thicket of the phylogenetic forest.
Puigbò P; Wolf YI; Koonin EV
J Biol; 2009; 8(6):59. PubMed ID: 19594957
[TBL] [Abstract][Full Text] [Related]
5. From complete genomes to measures of substitution rate variability within and between proteins.
Grishin NV; Wolf YI; Koonin EV
Genome Res; 2000 Jul; 10(7):991-1000. PubMed ID: 10899148
[TBL] [Abstract][Full Text] [Related]
6. The tree of life viewed through the contents of genomes.
House CH
Methods Mol Biol; 2009; 532():141-61. PubMed ID: 19271183
[TBL] [Abstract][Full Text] [Related]
7. The phylogenomics of protein structures: The backstory.
Kurland CG; Harish A
Biochimie; 2015 Dec; 119():284-302. PubMed ID: 26234735
[TBL] [Abstract][Full Text] [Related]
8. Genome-Wide Comparative Analysis of Phylogenetic Trees: The Prokaryotic Forest of Life.
Puigbò P; Wolf YI; Koonin EV
Methods Mol Biol; 2019; 1910():241-269. PubMed ID: 31278667
[TBL] [Abstract][Full Text] [Related]
9. The cobweb of life revealed by genome-scale estimates of horizontal gene transfer.
Ge F; Wang LS; Kim J
PLoS Biol; 2005 Oct; 3(10):e316. PubMed ID: 16122348
[TBL] [Abstract][Full Text] [Related]
10. GIGA: a simple, efficient algorithm for gene tree inference in the genomic age.
Thomas PD
BMC Bioinformatics; 2010 Jun; 11():312. PubMed ID: 20534164
[TBL] [Abstract][Full Text] [Related]
11. To tree or not to tree? Genome-wide quantification of recombination and reticulate evolution during the diversification of strict intracellular bacteria.
Hernández-López A; Chabrol O; Royer-Carenzi M; Merhej V; Pontarotti P; Raoult D
Genome Biol Evol; 2013; 5(12):2305-17. PubMed ID: 24259310
[TBL] [Abstract][Full Text] [Related]
12. Comparison of phylogenetic trees and search for a central trend in the "forest of life".
Koonin EV; Puigbò P; Wolf YI
J Comput Biol; 2011 Jul; 18(7):917-24. PubMed ID: 21457008
[TBL] [Abstract][Full Text] [Related]
13. Detecting phylogenetic breakpoints and discordance from genome-wide alignments for species tree reconstruction.
Ané C
Genome Biol Evol; 2011; 3():246-58. PubMed ID: 21362638
[TBL] [Abstract][Full Text] [Related]
14. Do orthologous gene phylogenies really support tree-thinking?
Bapteste E; Susko E; Leigh J; MacLeod D; Charlebois RL; Doolittle WF
BMC Evol Biol; 2005 May; 5():33. PubMed ID: 15913459
[TBL] [Abstract][Full Text] [Related]
15. The Turbulent Network Dynamics of Microbial Evolution and the Statistical Tree of Life.
Koonin EV
J Mol Evol; 2015 Jun; 80(5-6):244-50. PubMed ID: 25894542
[TBL] [Abstract][Full Text] [Related]
16. The net of life: reconstructing the microbial phylogenetic network.
Kunin V; Goldovsky L; Darzentas N; Ouzounis CA
Genome Res; 2005 Jul; 15(7):954-9. PubMed ID: 15965028
[TBL] [Abstract][Full Text] [Related]
17. Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification.
Jones CM; Stres B; Rosenquist M; Hallin S
Mol Biol Evol; 2008 Sep; 25(9):1955-66. PubMed ID: 18614527
[TBL] [Abstract][Full Text] [Related]
18. Horizontal gene transfer in human-associated microorganisms inferred by phylogenetic reconstruction and reconciliation.
Jeong H; Arif B; Caetano-Anollés G; Kim KM; Nasir A
Sci Rep; 2019 Apr; 9(1):5953. PubMed ID: 30976019
[TBL] [Abstract][Full Text] [Related]
19. Highways of gene sharing in prokaryotes.
Beiko RG; Harlow TJ; Ragan MA
Proc Natl Acad Sci U S A; 2005 Oct; 102(40):14332-7. PubMed ID: 16176988
[TBL] [Abstract][Full Text] [Related]
20. The impact of automated filtering of BLAST-determined homologs in the phylogenetic detection of horizontal gene transfer from a transcriptome assembly.
Wisecaver JH; Hackett JD
Mol Phylogenet Evol; 2014 Feb; 71():184-92. PubMed ID: 24321593
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
