106 related articles for article (PubMed ID: 12208512)
1. Monte Carlo simulations of voltage-driven translocation of a signal sequence.
Efremov RG; Volynsky PE; Nolde DE; van Dalen A; de Kruijff B; Arseniev AS
FEBS Lett; 2002 Aug; 526(1-3):97-100. PubMed ID: 12208512
[TBL] [Abstract][Full Text] [Related]
2. Interactions of hydrophobic peptides with lipid bilayers: Monte Carlo simulations with M2delta.
Kessel A; Shental-Bechor D; Haliloglu T; Ben-Tal N
Biophys J; 2003 Dec; 85(6):3431-44. PubMed ID: 14645040
[TBL] [Abstract][Full Text] [Related]
3. A Monte Carlo study of peptide insertion into lipid bilayers: equilibrium conformations and insertion mechanisms.
Maddox MW; Longo ML
Biophys J; 2002 Jan; 82(1 Pt 1):244-63. PubMed ID: 11751313
[TBL] [Abstract][Full Text] [Related]
4. Optimal Hydrophobicity and Reorientation of Amphiphilic Peptides Translocating through Membrane.
Kabelka I; Vácha R
Biophys J; 2018 Sep; 115(6):1045-1054. PubMed ID: 30177443
[TBL] [Abstract][Full Text] [Related]
5. Monte Carlo folding of trans-membrane helical peptides in an implicit generalized Born membrane.
Ulmschneider JP; Ulmschneider MB; Di Nola A
Proteins; 2007 Nov; 69(2):297-308. PubMed ID: 17600830
[TBL] [Abstract][Full Text] [Related]
6. Prediction of conformation of rat galanin in the presence and absence of water with the use of Monte Carlo methods and the ECEPP/3 force field.
Liwo A; Ołdziej S; Ciarkowski J; Kupryszewski G; Pincus MR; Wawak RJ; Rackovsky S; Scheraga HA
J Protein Chem; 1994 May; 13(4):375-80. PubMed ID: 7527217
[TBL] [Abstract][Full Text] [Related]
7. Insertion of peptide chains into lipid membranes: an off-lattice Monte Carlo dynamics model.
Milik M; Skolnick J
Proteins; 1993 Jan; 15(1):10-25. PubMed ID: 8451235
[TBL] [Abstract][Full Text] [Related]
8. Membrane adsorption, folding, insertion and translocation of synthetic trans-membrane peptides.
Ulmschneider MB; Ulmschneider JP
Mol Membr Biol; 2008 Apr; 25(3):245-57. PubMed ID: 18428040
[TBL] [Abstract][Full Text] [Related]
9. Computer simulation of polypeptide translocation through a nanopore.
Sikorski A; Romiszowski P
J Mol Model; 2005 Sep; 11(4-5):379-84. PubMed ID: 15806388
[TBL] [Abstract][Full Text] [Related]
10. Computer simulations of de novo designed helical proteins.
Sikorski A; Kolinski A; Skolnick J
Biophys J; 1998 Jul; 75(1):92-105. PubMed ID: 9649370
[TBL] [Abstract][Full Text] [Related]
11. Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential.
Liu Z; Dominy BN; Shakhnovich EI
J Am Chem Soc; 2004 Jul; 126(27):8515-28. PubMed ID: 15238009
[TBL] [Abstract][Full Text] [Related]
12. A solvent model for simulations of peptides in bilayers. II. Membrane-spanning alpha-helices.
Efremov RG; Nolde DE; Vergoten G; Arseniev AS
Biophys J; 1999 May; 76(5):2460-71. PubMed ID: 10233063
[TBL] [Abstract][Full Text] [Related]
13. Prediction of polyelectrolyte polypeptide structures using Monte Carlo conformational search methods with implicit solvation modeling.
Evans JS; Chan SI; Goddard WA
Protein Sci; 1995 Oct; 4(10):2019-31. PubMed ID: 8535238
[TBL] [Abstract][Full Text] [Related]
14. Folding simulations of small proteins.
Kim SY; Lee J; Lee J
Biophys Chem; 2005 Apr; 115(2-3):195-200. PubMed ID: 15752604
[TBL] [Abstract][Full Text] [Related]
15. Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniques.
Kolinski A; Ilkowski B; Skolnick J
Biophys J; 1999 Dec; 77(6):2942-52. PubMed ID: 10585918
[TBL] [Abstract][Full Text] [Related]
16. Insertion and hairpin formation of membrane proteins: a Monte Carlo study.
Baumgärtner A
Biophys J; 1996 Sep; 71(3):1248-55. PubMed ID: 8873999
[TBL] [Abstract][Full Text] [Related]
17. Monte Carlo simulations of beta-hairpin folding at constant temperature.
Sung SS
Biophys J; 1999 Jan; 76(1 Pt 1):164-75. PubMed ID: 9876131
[TBL] [Abstract][Full Text] [Related]
18. On the multiple-minima problem in the conformational analysis of polypeptides. IV. Application of the electrostatically driven Monte Carlo method to the 20-residue membrane-bound portion of melittin.
Ripoll DR; Scheraga HA
Biopolymers; 1990; 30(1-2):165-76. PubMed ID: 2224048
[TBL] [Abstract][Full Text] [Related]
19. Determination of the conformation of folding initiation sites in proteins by computer simulation.
Avbelj F; Moult J
Proteins; 1995 Oct; 23(2):129-41. PubMed ID: 8592695
[TBL] [Abstract][Full Text] [Related]
20. Monte Carlo simulations of tBid association with the mitochondrial outer membrane.
Veresov VG; Davidovskii AI
Eur Biophys J; 2007 Dec; 37(1):19-33. PubMed ID: 17375293
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
