168 related articles for article (PubMed ID: 12270898)
1. Genetic algorithms and parallel processing in maximum-likelihood phylogeny inference.
Brauer MJ; Holder MT; Dries LA; Zwickl DJ; Lewis PO; Hillis DM
Mol Biol Evol; 2002 Oct; 19(10):1717-26. PubMed ID: 12270898
[TBL] [Abstract][Full Text] [Related]
2. A genetic algorithm for maximum-likelihood phylogeny inference using nucleotide sequence data.
Lewis PO
Mol Biol Evol; 1998 Mar; 15(3):277-83. PubMed ID: 9501494
[TBL] [Abstract][Full Text] [Related]
3. Genetic algorithm for large-scale maximum parsimony phylogenetic analysis of proteins.
Hill T; Lundgren A; Fredriksson R; Schiöth HB
Biochim Biophys Acta; 2005 Aug; 1725(1):19-29. PubMed ID: 15990235
[TBL] [Abstract][Full Text] [Related]
4. MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heuristics.
Helaers R; Milinkovitch MC
BMC Bioinformatics; 2010 Jul; 11():379. PubMed ID: 20633263
[TBL] [Abstract][Full Text] [Related]
5. DPRml: distributed phylogeny reconstruction by maximum likelihood.
Keane TM; Naughton TJ; Travers SA; McInerney JO; McCormack GP
Bioinformatics; 2005 Apr; 21(7):969-74. PubMed ID: 15513992
[TBL] [Abstract][Full Text] [Related]
6. A structural EM algorithm for phylogenetic inference.
Friedman N; Ninio M; Pe'er I; Pupko T
J Comput Biol; 2002; 9(2):331-53. PubMed ID: 12015885
[TBL] [Abstract][Full Text] [Related]
7. AxML: a fast program for sequential and parallel phylogenetic tree calculations based on the maximum likelihood method.
Stamatakis AP; Ludwig T; Meier H; Wolf MJ
Proc IEEE Comput Soc Bioinform Conf; 2002; 1():21-8. PubMed ID: 15838120
[TBL] [Abstract][Full Text] [Related]
8. Bayesian coestimation of phylogeny and sequence alignment.
Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
[TBL] [Abstract][Full Text] [Related]
9. Phylogeny inference based on spectral graph clustering.
Zhang SB; Zhou SY; He JG; Lai JH
J Comput Biol; 2011 Apr; 18(4):627-37. PubMed ID: 21352066
[TBL] [Abstract][Full Text] [Related]
10. Accelerated likelihood surface exploration: the likelihood ratchet.
Vos RA
Syst Biol; 2003 Jun; 52(3):368-73. PubMed ID: 12775525
[TBL] [Abstract][Full Text] [Related]
11. Automated phylogenetic detection of recombination using a genetic algorithm.
Kosakovsky Pond SL; Posada D; Gravenor MB; Woelk CH; Frost SD
Mol Biol Evol; 2006 Oct; 23(10):1891-901. PubMed ID: 16818476
[TBL] [Abstract][Full Text] [Related]
12. Protein phylogenetic inference using maximum likelihood with a genetic algorithm.
Matsuda H
Pac Symp Biocomput; 1996; ():512-23. PubMed ID: 9390255
[TBL] [Abstract][Full Text] [Related]
13. Genetic algorithm-based maximum-likelihood analysis for molecular phylogeny.
Katoh K; Kuma K; Miyata T
J Mol Evol; 2001; 53(4-5):477-84. PubMed ID: 11675608
[TBL] [Abstract][Full Text] [Related]
14. Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used.
Takahashi K; Nei M
Mol Biol Evol; 2000 Aug; 17(8):1251-8. PubMed ID: 10908645
[TBL] [Abstract][Full Text] [Related]
15. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation.
Wang HC; Susko E; Roger AJ
Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033
[TBL] [Abstract][Full Text] [Related]
16. Reconstructing phylogeny by quadratically approximated maximum likelihood.
Woodhams MD; Hendy MD
Bioinformatics; 2004 Aug; 20 Suppl 1():i348-54. PubMed ID: 15262819
[TBL] [Abstract][Full Text] [Related]
17. Hessian calculation for phylogenetic likelihood based on the pruning algorithm and its applications.
Kenney T; Gu H
Stat Appl Genet Mol Biol; 2012 Sep; 11(4):Article 14. PubMed ID: 23023698
[TBL] [Abstract][Full Text] [Related]
18. A fast algorithm for joint reconstruction of ancestral amino acid sequences.
Pupko T; Pe'er I; Shamir R; Graur D
Mol Biol Evol; 2000 Jun; 17(6):890-6. PubMed ID: 10833195
[TBL] [Abstract][Full Text] [Related]
19. Reconstruction of ancestral genomic sequences using likelihood.
Elias I; Tuller T
J Comput Biol; 2007 Mar; 14(2):216-37. PubMed ID: 17456016
[TBL] [Abstract][Full Text] [Related]
20. Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood.
Hordijk W; Gascuel O
Bioinformatics; 2005 Dec; 21(24):4338-47. PubMed ID: 16234323
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
