203 related articles for article (PubMed ID: 12360525)
1. MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading.
Lu L; Lu H; Skolnick J
Proteins; 2002 Nov; 49(3):350-64. PubMed ID: 12360525
[TBL] [Abstract][Full Text] [Related]
2. Homology-based modeling of 3D structures of protein-protein complexes using alignments of modified sequence profiles.
Kundrotas PJ; Lensink MF; Alexov E
Int J Biol Macromol; 2008 Aug; 43(2):198-208. PubMed ID: 18572239
[TBL] [Abstract][Full Text] [Related]
3. Benchmarking of dimeric threading and structure refinement.
Grimm V; Zhang Y; Skolnick J
Proteins; 2006 May; 63(3):457-65. PubMed ID: 16463265
[TBL] [Abstract][Full Text] [Related]
4. Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.
Skolnick J; Kihara D; Zhang Y
Proteins; 2004 Aug; 56(3):502-18. PubMed ID: 15229883
[TBL] [Abstract][Full Text] [Related]
5. Defrosting the frozen approximation: PROSPECTOR--a new approach to threading.
Skolnick J; Kihara D
Proteins; 2001 Feb; 42(3):319-31. PubMed ID: 11151004
[TBL] [Abstract][Full Text] [Related]
6. Protein structure prediction by threading. Why it works and why it does not.
Mirny LA; Shakhnovich EI
J Mol Biol; 1998 Oct; 283(2):507-26. PubMed ID: 9769221
[TBL] [Abstract][Full Text] [Related]
7. Domain-based small molecule binding site annotation.
Snyder KA; Feldman HJ; Dumontier M; Salama JJ; Hogue CW
BMC Bioinformatics; 2006 Mar; 7():152. PubMed ID: 16545112
[TBL] [Abstract][Full Text] [Related]
8. TOUCHSTONE: a unified approach to protein structure prediction.
Skolnick J; Zhang Y; Arakaki AK; Kolinski A; Boniecki M; Szilágyi A; Kihara D
Proteins; 2003; 53 Suppl 6():469-79. PubMed ID: 14579335
[TBL] [Abstract][Full Text] [Related]
9. Development of unified statistical potentials describing protein-protein interactions.
Lu H; Lu L; Skolnick J
Biophys J; 2003 Mar; 84(3):1895-901. PubMed ID: 12609891
[TBL] [Abstract][Full Text] [Related]
10. Prediction of multimolecular assemblies by multiple docking.
Inbar Y; Benyamini H; Nussinov R; Wolfson HJ
J Mol Biol; 2005 Jun; 349(2):435-47. PubMed ID: 15890207
[TBL] [Abstract][Full Text] [Related]
11. A reduced protein model with accurate native-structure identification ability.
Betancourt MR
Proteins; 2003 Dec; 53(4):889-907. PubMed ID: 14635131
[TBL] [Abstract][Full Text] [Related]
12. [When and how can homologs overcome errors in the energy estimates and make the 3D structure prediction possible].
Finkel'shteĭn AV; Rykunov DS; Lobanov MIu; Badretdinov FIa; Reva BA; Skolnick J; Mirnyĭ LA; Shakhnovich EI
Biofizika; 1999; 44(6):980-91. PubMed ID: 10707272
[TBL] [Abstract][Full Text] [Related]
13. Combinatorial docking approach for structure prediction of large proteins and multi-molecular assemblies.
Inbar Y; Benyamini H; Nussinov R; Wolfson HJ
Phys Biol; 2005 Nov; 2(4):S156-65. PubMed ID: 16280621
[TBL] [Abstract][Full Text] [Related]
14. Docking of small ligands to low-resolution and theoretically predicted receptor structures.
Wojciechowski M; Skolnick J
J Comput Chem; 2002 Jan; 23(1):189-97. PubMed ID: 11913386
[TBL] [Abstract][Full Text] [Related]
15. Assessing and predicting protein interactions using both local and global network topological metrics.
Liu G; Li J; Wong L
Genome Inform; 2008; 21():138-49. PubMed ID: 19425154
[TBL] [Abstract][Full Text] [Related]
16. Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre.
Bennett-Lovsey RM; Herbert AD; Sternberg MJ; Kelley LA
Proteins; 2008 Feb; 70(3):611-25. PubMed ID: 17876813
[TBL] [Abstract][Full Text] [Related]
17. Predicting protein-protein interactions from sequences in a hybridization space.
Chou KC; Cai YD
J Proteome Res; 2006 Feb; 5(2):316-22. PubMed ID: 16457597
[TBL] [Abstract][Full Text] [Related]
18. Estimating quality of template-based protein models by alignment stability.
Chen H; Kihara D
Proteins; 2008 May; 71(3):1255-74. PubMed ID: 18041762
[TBL] [Abstract][Full Text] [Related]
19. Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome.
Lu L; Arakaki AK; Lu H; Skolnick J
Genome Res; 2003 Jun; 13(6A):1146-54. PubMed ID: 12799350
[TBL] [Abstract][Full Text] [Related]
20. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
Gao Y; Douguet D; Tovchigrechko A; Vakser IA
Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]