These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
90 related articles for article (PubMed ID: 12368093)
1. Rationalization of gene regulation by a eukaryotic transcription factor: calculation of regulatory region occupancy from predicted binding affinities. Liu X; Clarke ND J Mol Biol; 2002 Oct; 323(1):1-8. PubMed ID: 12368093 [TBL] [Abstract][Full Text] [Related]
2. Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. Liu X; Lee CK; Granek JA; Clarke ND; Lieb JD Genome Res; 2006 Dec; 16(12):1517-28. PubMed ID: 17053089 [TBL] [Abstract][Full Text] [Related]
3. Inferring direct regulatory targets from expression and genome location analyses: a comparison of transcription factor deletion and overexpression. Tang L; Liu X; Clarke ND BMC Genomics; 2006 Aug; 7():215. PubMed ID: 16923194 [TBL] [Abstract][Full Text] [Related]
4. Free DNA concentration in E. coli estimated by an analysis of competition for DNA binding proteins. Stickle DF; Vossen KM; Riley DA; Fried MG J Theor Biol; 1994 May; 168(1):1-12. PubMed ID: 8022188 [TBL] [Abstract][Full Text] [Related]
5. Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes. Afek A; Cohen H; Barber-Zucker S; Gordân R; Lukatsky DB PLoS Comput Biol; 2015 Aug; 11(8):e1004429. PubMed ID: 26285121 [TBL] [Abstract][Full Text] [Related]
6. Integrating genomic data to predict transcription factor binding. Holloway DT; Kon M; DeLisi C Genome Inform; 2005; 16(1):83-94. PubMed ID: 16362910 [TBL] [Abstract][Full Text] [Related]
7. OHMM: a Hidden Markov Model accurately predicting the occupancy of a transcription factor with a self-overlapping binding motif. Drawid A; Gupta N; Nagaraj VH; Gélinas C; Sengupta AM BMC Bioinformatics; 2009 Jul; 10():208. PubMed ID: 19583839 [TBL] [Abstract][Full Text] [Related]
8. An equilibrium partitioning model connecting gene expression and cis-motif content. Mellor J; DeLisi C Bioinformatics; 2006 Jul; 22(14):e368-74. PubMed ID: 16873495 [TBL] [Abstract][Full Text] [Related]
9. Thermodynamics of the interactions of lac repressor with variants of the symmetric lac operator: effects of converting a consensus site to a non-specific site. Frank DE; Saecker RM; Bond JP; Capp MW; Tsodikov OV; Melcher SE; Levandoski MM; Record MT J Mol Biol; 1997 Apr; 267(5):1186-206. PubMed ID: 9150406 [TBL] [Abstract][Full Text] [Related]
10. Identification of the RUSH consensus-binding site by cyclic amplification and selection of targets: demonstration that RUSH mediates the ability of prolactin to augment progesterone-dependent gene expression. Hewetson A; Hendrix EC; Mansharamani M; Lee VH; Chilton BS Mol Endocrinol; 2002 Sep; 16(9):2101-12. PubMed ID: 12198246 [TBL] [Abstract][Full Text] [Related]
11. A consensus DNA recognition motif for two KDWK transcription factors identifies flexible-length, CpG-methylation sensitive cognate binding sites in the majority of human promoters. Burnett E; Christensen J; Tattersall P J Mol Biol; 2001 Dec; 314(5):1029-39. PubMed ID: 11743720 [TBL] [Abstract][Full Text] [Related]
12. Cross-regulation of the Bacillus subtilis glnRA and tnrA genes provides evidence for DNA binding site discrimination by GlnR and TnrA. Zalieckas JM; Wray LV; Fisher SH J Bacteriol; 2006 Apr; 188(7):2578-85. PubMed ID: 16547045 [TBL] [Abstract][Full Text] [Related]
13. Restriction of interferon gamma responsiveness and basal expression of the myeloid human Fc gamma R1b gene is mediated by a functional PU.1 site and a transcription initiator consensus. Eichbaum QG; Iyer R; Raveh DP; Mathieu C; Ezekowitz RA J Exp Med; 1994 Jun; 179(6):1985-96. PubMed ID: 8195721 [TBL] [Abstract][Full Text] [Related]
14. Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. Berg OG; von Hippel PH J Mol Biol; 1987 Feb; 193(4):723-50. PubMed ID: 3612791 [TBL] [Abstract][Full Text] [Related]
15. Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding. Le DD; Shimko TC; Aditham AK; Keys AM; Longwell SA; Orenstein Y; Fordyce PM Proc Natl Acad Sci U S A; 2018 Apr; 115(16):E3702-E3711. PubMed ID: 29588420 [TBL] [Abstract][Full Text] [Related]
16. Promoter binding factors regulating cyclin B transcription in the sea urchin embryo. Thatcher JD; McBride B; Katula KS DNA Cell Biol; 1995 Oct; 14(10):869-81. PubMed ID: 7546293 [TBL] [Abstract][Full Text] [Related]