732 related articles for article (PubMed ID: 12385986)
1. Using robotics to fold proteins and dock ligands.
Brutlag D; Apaydin S; Guestrin C; Hsu D; Varma C; Singh A; Latombe JC
Bioinformatics; 2002; 18 Suppl 2():S74. PubMed ID: 12385986
[TBL] [Abstract][Full Text] [Related]
2. Stochastic roadmap simulation: an efficient representation and algorithm for analyzing molecular motion.
Apaydin MS; Brutlag DL; Guestrin C; Hsu D; Latombe JC; Varma C
J Comput Biol; 2003; 10(3-4):257-81. PubMed ID: 12935328
[TBL] [Abstract][Full Text] [Related]
3. Stochastic roadmap simulation for the study of ligand-protein interactions.
Apaydin MS; Guestrin CE; Varma C; Brutlag DL; Latombe JC
Bioinformatics; 2002; 18 Suppl 2():S18-26. PubMed ID: 12385979
[TBL] [Abstract][Full Text] [Related]
4. Constrained proper sampling of conformations of transition state ensemble of protein folding.
Lin M; Zhang J; Lu HM; Chen R; Liang J
J Chem Phys; 2011 Feb; 134(7):075103. PubMed ID: 21341875
[TBL] [Abstract][Full Text] [Related]
5. Application of the multiensemble sampling to the equilibrium folding of proteins.
Son HS; Kim SY; Lee J; Han KK
Bioinformatics; 2006 Aug; 22(15):1832-7. PubMed ID: 16766555
[TBL] [Abstract][Full Text] [Related]
6. Role of proximal His93 in nitric oxide binding to metmyoglobin. Application of continuum solvation in Monte Carlo protein simulations.
Keserü GM; Menyhárd DK
Biochemistry; 1999 May; 38(20):6614-22. PubMed ID: 10350480
[TBL] [Abstract][Full Text] [Related]
7. ES/IS: estimation of conformational free energy by combining dynamics simulations with explicit solvent with an implicit solvent continuum model.
Vorobjev YN; Hermans J
Biophys Chem; 1999 Apr; 78(1-2):195-205. PubMed ID: 10343388
[TBL] [Abstract][Full Text] [Related]
8. Elucidating the ensemble of functionally-relevant transitions in protein systems with a robotics-inspired method.
Molloy K; Shehu A
BMC Struct Biol; 2013; 13 Suppl 1(Suppl 1):S8. PubMed ID: 24565158
[TBL] [Abstract][Full Text] [Related]
9. Exhaustive mutagenesis in silico: multicoordinate free energy calculations on proteins and peptides.
Pitera JW; Kollman PA
Proteins; 2000 Nov; 41(3):385-97. PubMed ID: 11025549
[TBL] [Abstract][Full Text] [Related]
10. Using motion planning to study protein folding pathways.
Amato NM; Song G
J Comput Biol; 2002; 9(2):149-68. PubMed ID: 12015875
[TBL] [Abstract][Full Text] [Related]
11. A motion planning approach to flexible ligand binding.
Singh AP; Latombe JC; Brutlag DL
Proc Int Conf Intell Syst Mol Biol; 1999; ():252-61. PubMed ID: 10786308
[TBL] [Abstract][Full Text] [Related]
12. The 6th Computational Structural Bioinformatics Workshop.
He J; Shehu A; Haspel N; Chen B
BMC Struct Biol; 2013; 13 Suppl 1(Suppl 1):I1. PubMed ID: 24564893
[TBL] [Abstract][Full Text] [Related]
13. Folding of the GB1 hairpin peptide from discrete path sampling.
Evans DA; Wales DJ
J Chem Phys; 2004 Jul; 121(2):1080-90. PubMed ID: 15260643
[TBL] [Abstract][Full Text] [Related]
14. Exploring the landscape of protein-ligand interaction energy using probabilistic approach.
Pacholczyk M; Kimmel M
J Comput Biol; 2011 Jun; 18(6):843-50. PubMed ID: 21091064
[TBL] [Abstract][Full Text] [Related]
15. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
Taylor RD; Jewsbury PJ; Essex JW
J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
[TBL] [Abstract][Full Text] [Related]
16. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
Vorobjev YN; Almagro JC; Hermans J
Proteins; 1998 Sep; 32(4):399-413. PubMed ID: 9726412
[TBL] [Abstract][Full Text] [Related]
17. Sampling-based exploration of folded state of a protein under kinematic and geometric constraints.
Yao P; Zhang L; Latombe JC
Proteins; 2012 Jan; 80(1):25-43. PubMed ID: 21971749
[TBL] [Abstract][Full Text] [Related]
18. Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.
Sali A; Shakhnovich E; Karplus M
J Mol Biol; 1994 Feb; 235(5):1614-36. PubMed ID: 8107095
[TBL] [Abstract][Full Text] [Related]
19. ART-RRT: As-Rigid-As-Possible search for protein conformational transition paths.
Nguyen MK; Jaillet L; Redon S
J Comput Aided Mol Des; 2019 Aug; 33(8):705-727. PubMed ID: 31435895
[TBL] [Abstract][Full Text] [Related]
20. Limited conformational space for early-stage protein folding simulation.
Bryliński M; Jurkowski W; Konieczny L; Roterman I
Bioinformatics; 2004 Jan; 20(2):199-205. PubMed ID: 14734311
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
