These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
6. SUPERFAMILY--sophisticated comparative genomics, data mining, visualization and phylogeny. Wilson D; Pethica R; Zhou Y; Talbot C; Vogel C; Madera M; Chothia C; Gough J Nucleic Acids Res; 2009 Jan; 37(Database issue):D380-6. PubMed ID: 19036790 [TBL] [Abstract][Full Text] [Related]
7. The SUPERFAMILY database in 2007: families and functions. Wilson D; Madera M; Vogel C; Chothia C; Gough J Nucleic Acids Res; 2007 Jan; 35(Database issue):D308-13. PubMed ID: 17098927 [TBL] [Abstract][Full Text] [Related]
8. 3D-GENOMICS: a database to compare structural and functional annotations of proteins between sequenced genomes. Fleming K; Müller A; MacCallum RM; Sternberg MJ Nucleic Acids Res; 2004 Jan; 32(Database issue):D245-50. PubMed ID: 14681404 [TBL] [Abstract][Full Text] [Related]
9. PASS2: an automated database of protein alignments organised as structural superfamilies. Bhaduri A; Pugalenthi G; Sowdhamini R BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245 [TBL] [Abstract][Full Text] [Related]
10. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. Gough J; Karplus K; Hughey R; Chothia C J Mol Biol; 2001 Nov; 313(4):903-19. PubMed ID: 11697912 [TBL] [Abstract][Full Text] [Related]
12. PASS2: a semi-automated database of protein alignments organised as structural superfamilies. Mallika V; Bhaduri A; Sowdhamini R Nucleic Acids Res; 2002 Jan; 30(1):284-8. PubMed ID: 11752316 [TBL] [Abstract][Full Text] [Related]
13. PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe. Ghosh P; Bhattacharyya T; Mathew OK; Sowdhamini R Database (Oxford); 2019 Jan; 2019():. PubMed ID: 30820573 [TBL] [Abstract][Full Text] [Related]
14. SUPERFAMILY 1.75 including a domain-centric gene ontology method. de Lima Morais DA; Fang H; Rackham OJ; Wilson D; Pethica R; Chothia C; Gough J Nucleic Acids Res; 2011 Jan; 39(Database issue):D427-34. PubMed ID: 21062816 [TBL] [Abstract][Full Text] [Related]
15. Assessing strategies for improved superfamily recognition. Sillitoe I; Dibley M; Bray J; Addou S; Orengo C Protein Sci; 2005 Jul; 14(7):1800-10. PubMed ID: 15937274 [TBL] [Abstract][Full Text] [Related]
16. ASTRAL compendium enhancements. Chandonia JM; Walker NS; Lo Conte L; Koehl P; Levitt M; Brenner SE Nucleic Acids Res; 2002 Jan; 30(1):260-3. PubMed ID: 11752310 [TBL] [Abstract][Full Text] [Related]
17. AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings. Gewehr JE; Hintermair V; Zimmer R Bioinformatics; 2007 May; 23(10):1203-10. PubMed ID: 17379694 [TBL] [Abstract][Full Text] [Related]
18. PASS2 version 4: an update to the database of structure-based sequence alignments of structural domain superfamilies. Gandhimathi A; Nair AG; Sowdhamini R Nucleic Acids Res; 2012 Jan; 40(Database issue):D531-4. PubMed ID: 22123743 [TBL] [Abstract][Full Text] [Related]
19. SCOP database in 2004: refinements integrate structure and sequence family data. Andreeva A; Howorth D; Brenner SE; Hubbard TJ; Chothia C; Murzin AG Nucleic Acids Res; 2004 Jan; 32(Database issue):D226-9. PubMed ID: 14681400 [TBL] [Abstract][Full Text] [Related]
20. A comparison of sequence and structure protein domain families as a basis for structural genomics. Elofsson A; Sonnhammer EL Bioinformatics; 1999 Jun; 15(6):480-500. PubMed ID: 10383473 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]