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3. WebTraceMiner: a web service for processing and mining EST sequence trace files. Liang C; Wang G; Liu L; Ji G; Liu Y; Chen J; Webb JS; Reese G; Dean JF Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W137-42. PubMed ID: 17488839 [TBL] [Abstract][Full Text] [Related]
5. EST pipeline system: detailed and automated EST data processing and mining. Xu H; He L; Zhu Y; Huang W; Fang L; Tao L; Zhu Y; Cai L; Xu H; Zhang L; Xu H; Zhou Y Genomics Proteomics Bioinformatics; 2003 Aug; 1(3):236-42. PubMed ID: 15629036 [TBL] [Abstract][Full Text] [Related]
6. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes]. Zhang DL; Ji L; Li YD Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601 [TBL] [Abstract][Full Text] [Related]
7. ESAP plus: a web-based server for EST-SSR marker development. Ponyared P; Ponsawat J; Tongsima S; Seresangtakul P; Akkasaeng C; Tantisuwichwong N BMC Genomics; 2016 Dec; 17(Suppl 13):1035. PubMed ID: 28155670 [TBL] [Abstract][Full Text] [Related]
8. EST processing: from trace to sequence. Schmid R; Blaxter M Methods Mol Biol; 2009; 533():189-220. PubMed ID: 19277557 [TBL] [Abstract][Full Text] [Related]
9. A hitchhiker's guide to expressed sequence tag (EST) analysis. Nagaraj SH; Gasser RB; Ranganathan S Brief Bioinform; 2007 Jan; 8(1):6-21. PubMed ID: 16772268 [TBL] [Abstract][Full Text] [Related]
10. OrthoSelect: a protocol for selecting orthologous groups in phylogenomics. Schreiber F; Pick K; Erpenbeck D; Wörheide G; Morgenstern B BMC Bioinformatics; 2009 Jul; 10():219. PubMed ID: 19607672 [TBL] [Abstract][Full Text] [Related]
11. ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform. Nagaraj SH; Deshpande N; Gasser RB; Ranganathan S Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W143-7. PubMed ID: 17545197 [TBL] [Abstract][Full Text] [Related]
12. PESTAS: a web server for EST analysis and sequence mining. Nam SH; Kim DW; Jung TS; Choi YS; Kim DW; Choi HS; Choi SH; Park HS Bioinformatics; 2009 Jul; 25(14):1846-8. PubMed ID: 19414531 [TBL] [Abstract][Full Text] [Related]
13. More than 1,000 putative new human signalling proteins revealed by EST data mining. Schultz J; Doerks T; Ponting CP; Copley RR; Bork P Nat Genet; 2000 Jun; 25(2):201-4. PubMed ID: 10835637 [TBL] [Abstract][Full Text] [Related]
14. ESTIMA, a tool for EST management in a multi-project environment. Kumar CG; LeDuc R; Gong G; Roinishivili L; Lewin HA; Liu L BMC Bioinformatics; 2004 Nov; 5():176. PubMed ID: 15527510 [TBL] [Abstract][Full Text] [Related]
15. JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow. Latorre M; Silva H; Saba J; Guziolowski C; Vizoso P; Martinez V; Maldonado J; Morales A; Caroca R; Cambiazo V; Campos-Vargas R; Gonzalez M; Orellana A; Retamales J; Meisel LA BMC Bioinformatics; 2006 Nov; 7():513. PubMed ID: 17123449 [TBL] [Abstract][Full Text] [Related]
16. EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Masoudi-Nejad A; Tonomura K; Kawashima S; Moriya Y; Suzuki M; Itoh M; Kanehisa M; Endo T; Goto S Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W459-62. PubMed ID: 16845049 [TBL] [Abstract][Full Text] [Related]
17. The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes. Lee Y; Tsai J; Sunkara S; Karamycheva S; Pertea G; Sultana R; Antonescu V; Chan A; Cheung F; Quackenbush J Nucleic Acids Res; 2005 Jan; 33(Database issue):D71-4. PubMed ID: 15608288 [TBL] [Abstract][Full Text] [Related]
18. TBestDB: a taxonomically broad database of expressed sequence tags (ESTs). O'Brien EA; Koski LB; Zhang Y; Yang L; Wang E; Gray MW; Burger G; Lang BF Nucleic Acids Res; 2007 Jan; 35(Database issue):D445-51. PubMed ID: 17202165 [TBL] [Abstract][Full Text] [Related]
19. Pairagon+N-SCAN_EST: a model-based gene annotation pipeline. Arumugam M; Wei C; Brown RH; Brent MR Genome Biol; 2006; 7 Suppl 1(Suppl 1):S5.1-10. PubMed ID: 16925839 [TBL] [Abstract][Full Text] [Related]