These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
151 related articles for article (PubMed ID: 12411592)
1. A novel use of equilibrium frequencies in models of sequence evolution. Goldman N; Whelan S Mol Biol Evol; 2002 Nov; 19(11):1821-31. PubMed ID: 12411592 [TBL] [Abstract][Full Text] [Related]
2. Bayesian coestimation of phylogeny and sequence alignment. Lunter G; Miklós I; Drummond A; Jensen JL; Hein J BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354 [TBL] [Abstract][Full Text] [Related]
3. An amino acid substitution-selection model adjusts residue fitness to improve phylogenetic estimation. Wang HC; Susko E; Roger AJ Mol Biol Evol; 2014 Apr; 31(4):779-92. PubMed ID: 24441033 [TBL] [Abstract][Full Text] [Related]
4. Empirical models for substitution in ribosomal RNA. Smith AD; Lui TW; Tillier ER Mol Biol Evol; 2004 Mar; 21(3):419-27. PubMed ID: 14660689 [TBL] [Abstract][Full Text] [Related]
5. A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny. Wang HC; Li K; Susko E; Roger AJ BMC Evol Biol; 2008 Dec; 8():331. PubMed ID: 19087270 [TBL] [Abstract][Full Text] [Related]
6. An improved general amino acid replacement matrix. Le SQ; Gascuel O Mol Biol Evol; 2008 Jul; 25(7):1307-20. PubMed ID: 18367465 [TBL] [Abstract][Full Text] [Related]
7. A collection of amino acid replacement matrices derived from clusters of orthologs. Olsen R; Loomis WF J Mol Evol; 2005 Nov; 61(5):659-65. PubMed ID: 16245010 [TBL] [Abstract][Full Text] [Related]
8. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Tamura K; Peterson D; Peterson N; Stecher G; Nei M; Kumar S Mol Biol Evol; 2011 Oct; 28(10):2731-9. PubMed ID: 21546353 [TBL] [Abstract][Full Text] [Related]
9. Antibody-specific model of amino acid substitution for immunological inferences from alignments of antibody sequences. Mirsky A; Kazandjian L; Anisimova M Mol Biol Evol; 2015 Mar; 32(3):806-19. PubMed ID: 25534034 [TBL] [Abstract][Full Text] [Related]
10. Codon substitution models based on residue similarity and their applications. Liu X; Liu H; Guo W; Yu K Gene; 2012 Nov; 509(1):136-41. PubMed ID: 22902303 [TBL] [Abstract][Full Text] [Related]
12. Simulating DNA coding sequence evolution with EvolveAGene 3. Hall BG Mol Biol Evol; 2008 Apr; 25(4):688-95. PubMed ID: 18192698 [TBL] [Abstract][Full Text] [Related]
13. A configuration space of homologous proteins conserving mutual information and allowing a phylogeny inference based on pair-wise Z-score probabilities. Bastien O; Ortet P; Roy S; Maréchal E BMC Bioinformatics; 2005 Mar; 6():49. PubMed ID: 15757521 [TBL] [Abstract][Full Text] [Related]
14. Improving phylogenetic inference with a semiempirical amino acid substitution model. Zoller S; Schneider A Mol Biol Evol; 2013 Feb; 30(2):469-79. PubMed ID: 23002090 [TBL] [Abstract][Full Text] [Related]
15. A transition probability model for amino acid substitutions from blocks. Veerassamy S; Smith A; Tillier ER J Comput Biol; 2003; 10(6):997-1010. PubMed ID: 14980022 [TBL] [Abstract][Full Text] [Related]
16. A new parameter-rich structure-aware mechanistic model for amino acid substitution during evolution. Chi PB; Kim D; Lai JK; Bykova N; Weber CC; Kubelka J; Liberles DA Proteins; 2018 Feb; 86(2):218-228. PubMed ID: 29178386 [TBL] [Abstract][Full Text] [Related]
17. Estimating amino acid substitution models: a comparison of Dayhoff's estimator, the resolvent approach and a maximum likelihood method. Müller T; Spang R; Vingron M Mol Biol Evol; 2002 Jan; 19(1):8-13. PubMed ID: 11752185 [TBL] [Abstract][Full Text] [Related]
18. MISFITS: evaluating the goodness of fit between a phylogenetic model and an alignment. Nguyen MA; Klaere S; von Haeseler A Mol Biol Evol; 2011 Jan; 28(1):143-52. PubMed ID: 20643866 [TBL] [Abstract][Full Text] [Related]
19. Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs. Dutheil J; Boussau B BMC Evol Biol; 2008 Sep; 8():255. PubMed ID: 18808672 [TBL] [Abstract][Full Text] [Related]
20. Evolutionary model selection with a genetic algorithm: a case study using stem RNA. Kosakovsky Pond SL; Mannino FV; Gravenor MB; Muse SV; Frost SD Mol Biol Evol; 2007 Jan; 24(1):159-70. PubMed ID: 17038448 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]