193 related articles for article (PubMed ID: 12471597)
1. Long- and short-range interactions in native protein structures are consistent/minimally frustrated in sequence space.
Miyazawa S; Jernigan RL
Proteins; 2003 Jan; 50(1):35-43. PubMed ID: 12471597
[TBL] [Abstract][Full Text] [Related]
2. An empirical energy potential with a reference state for protein fold and sequence recognition.
Miyazawa S; Jernigan RL
Proteins; 1999 Aug; 36(3):357-69. PubMed ID: 10409829
[TBL] [Abstract][Full Text] [Related]
3. Evaluation of short-range interactions as secondary structure energies for protein fold and sequence recognition.
Miyazawa S; Jernigan RL
Proteins; 1999 Aug; 36(3):347-56. PubMed ID: 10409828
[TBL] [Abstract][Full Text] [Related]
4. Another look at the conditions for the extraction of protein knowledge-based potentials.
Betancourt MR
Proteins; 2009 Jul; 76(1):72-85. PubMed ID: 19089977
[TBL] [Abstract][Full Text] [Related]
5. Coarse-grained protein model with residue orientation energies derived from atomic force fields.
Betancourt MR
J Phys Chem B; 2009 Nov; 113(44):14824-30. PubMed ID: 19817469
[TBL] [Abstract][Full Text] [Related]
6. Inter-residue interactions in protein folding and stability.
Gromiha MM; Selvaraj S
Prog Biophys Mol Biol; 2004 Oct; 86(2):235-77. PubMed ID: 15288760
[TBL] [Abstract][Full Text] [Related]
7. Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.
Miyazawa S; Jernigan RL
J Mol Biol; 1996 Mar; 256(3):623-44. PubMed ID: 8604144
[TBL] [Abstract][Full Text] [Related]
8. Local propensities and statistical potentials of backbone dihedral angles in proteins.
Betancourt MR; Skolnick J
J Mol Biol; 2004 Sep; 342(2):635-49. PubMed ID: 15327961
[TBL] [Abstract][Full Text] [Related]
9. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
Mukherjee A; Bagchi B
J Chem Phys; 2004 Jan; 120(3):1602-12. PubMed ID: 15268287
[TBL] [Abstract][Full Text] [Related]
10. Local interactions in protein folding determined through an inverse folding model.
Bastolla U; Porto M; Ortíz AR
Proteins; 2008 Apr; 71(1):278-99. PubMed ID: 17932940
[TBL] [Abstract][Full Text] [Related]
11. Enhanced sampling near the native conformation using statistical potentials for local side-chain and backbone interactions.
Fang Q; Shortle D
Proteins; 2005 Jul; 60(1):97-102. PubMed ID: 15852306
[TBL] [Abstract][Full Text] [Related]
12. How well can we predict native contacts in proteins based on decoy structures and their energies?
Zhu J; Zhu Q; Shi Y; Liu H
Proteins; 2003 Sep; 52(4):598-608. PubMed ID: 12910459
[TBL] [Abstract][Full Text] [Related]
13. Inter-residue and solvent-residue interactions in proteins: a statistical study on experimental structures.
Chelli R; Gervasio FL; Procacci P; Schettino V
Proteins; 2004 Apr; 55(1):139-51. PubMed ID: 14997548
[TBL] [Abstract][Full Text] [Related]
14. Exploring the conformational space of protein loops using a mean field technique with MOLS sampling.
Kanagasabai V; Arunachalam J; Prasad PA; Gautham N
Proteins; 2007 Jun; 67(4):908-21. PubMed ID: 17357159
[TBL] [Abstract][Full Text] [Related]
15. Design of amino acid sequences to fold into C(alpha)-model proteins.
Amatori A; Tiana G; Sutto L; Ferkinghoff-Borg J; Trovato A; Broglia RA
J Chem Phys; 2005 Aug; 123(5):054904. PubMed ID: 16108690
[TBL] [Abstract][Full Text] [Related]
16. Probing possible downhill folding: native contact topology likely places a significant constraint on the folding cooperativity of proteins with approximately 40 residues.
Badasyan A; Liu Z; Chan HS
J Mol Biol; 2008 Dec; 384(2):512-30. PubMed ID: 18823994
[TBL] [Abstract][Full Text] [Related]
17. TOUCHSTONEX: protein structure prediction with sparse NMR data.
Li W; Zhang Y; Kihara D; Huang YJ; Zheng D; Montelione GT; Kolinski A; Skolnick J
Proteins; 2003 Nov; 53(2):290-306. PubMed ID: 14517980
[TBL] [Abstract][Full Text] [Related]
18. Stability constraints and protein evolution: the role of chain length, composition and disulfide bonds.
Bastolla U; Demetrius L
Protein Eng Des Sel; 2005 Sep; 18(9):405-15. PubMed ID: 16085657
[TBL] [Abstract][Full Text] [Related]
19. Energetics of the native and non-native states of the glycophorin transmembrane helix dimer.
Mottamal M; Zhang J; Lazaridis T
Proteins; 2006 Mar; 62(4):996-1009. PubMed ID: 16395713
[TBL] [Abstract][Full Text] [Related]
20. Comparing folding codes for proteins and polymers.
Chan HS; Dill KA
Proteins; 1996 Mar; 24(3):335-44. PubMed ID: 8778780
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]