BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

109 related articles for article (PubMed ID: 12490453)

  • 1. A hierarchical approach to aligning collinear regions of genomes.
    Roytberg MA; Ogurtsov AY; Shabalina SA; Kondrashov AS
    Bioinformatics; 2002 Dec; 18(12):1673-80. PubMed ID: 12490453
    [TBL] [Abstract][Full Text] [Related]  

  • 2. OWEN: aligning long collinear regions of genomes.
    Ogurtsov AY; Roytberg MA; Shabalina SA; Kondrashov AS
    Bioinformatics; 2002 Dec; 18(12):1703-4. PubMed ID: 12490463
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Tree Gibbs Sampler: identifying conserved motifs without aligning orthologous sequences.
    Cai X; Hu H; Li XS
    Bioinformatics; 2007 Aug; 23(15):2013-4. PubMed ID: 17540681
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Homology assessment and molecular sequence alignment.
    Phillips AJ
    J Biomed Inform; 2006 Feb; 39(1):18-33. PubMed ID: 16380300
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GeneSyn: a tool for detecting conserved gene order across genomes.
    Pavesi G; Mauri G; Iannelli F; Gissi C; Pesole G
    Bioinformatics; 2004 Jun; 20(9):1472-4. PubMed ID: 14976031
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Using shared genomic synteny and shared protein functions to enhance the identification of orthologous gene pairs.
    Zheng XH; Lu F; Wang ZY; Zhong F; Hoover J; Mural R
    Bioinformatics; 2005 Mar; 21(6):703-10. PubMed ID: 15458983
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Glocal alignment: finding rearrangements during alignment.
    Brudno M; Malde S; Poliakov A; Do CB; Couronne O; Dubchak I; Batzoglou S
    Bioinformatics; 2003; 19 Suppl 1():i54-62. PubMed ID: 12855437
    [TBL] [Abstract][Full Text] [Related]  

  • 8. OMA Browser--exploring orthologous relations across 352 complete genomes.
    Schneider A; Dessimoz C; Gonnet GH
    Bioinformatics; 2007 Aug; 23(16):2180-2. PubMed ID: 17545180
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Multiple organism algorithm for finding ultraconserved elements.
    Christley S; Lobo NF; Madey G
    BMC Bioinformatics; 2008 Jan; 9():15. PubMed ID: 18186941
    [TBL] [Abstract][Full Text] [Related]  

  • 10. LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA.
    Brudno M; Do CB; Cooper GM; Kim MF; Davydov E; ; Green ED; Sidow A; Batzoglou S
    Genome Res; 2003 Apr; 13(4):721-31. PubMed ID: 12654723
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Efficient multiple genome alignment.
    Höhl M; Kurtz S; Ohlebusch E
    Bioinformatics; 2002; 18 Suppl 1():S312-20. PubMed ID: 12169561
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DAGchainer: a tool for mining segmental genome duplications and synteny.
    Haas BJ; Delcher AL; Wortman JR; Salzberg SL
    Bioinformatics; 2004 Dec; 20(18):3643-6. PubMed ID: 15247098
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BLISS 2.0: a web-based tool for predicting conserved regulatory modules in distantly-related orthologous sequences.
    Meng H; Banerjee A; Zhou L
    Bioinformatics; 2007 Dec; 23(23):3249-50. PubMed ID: 17660203
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DIALIGN: finding local similarities by multiple sequence alignment.
    Morgenstern B; Frech K; Dress A; Werner T
    Bioinformatics; 1998; 14(3):290-4. PubMed ID: 9614273
    [TBL] [Abstract][Full Text] [Related]  

  • 15. CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.
    Berezikov E; Guryev V; Plasterk RH; Cuppen E
    Genome Res; 2004 Jan; 14(1):170-8. PubMed ID: 14672977
    [TBL] [Abstract][Full Text] [Related]  

  • 16. OrthologID: automation of genome-scale ortholog identification within a parsimony framework.
    Chiu JC; Lee EK; Egan MG; Sarkar IN; Coruzzi GM; DeSalle R
    Bioinformatics; 2006 Mar; 22(6):699-707. PubMed ID: 16410324
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MAVID multiple alignment server.
    Bray N; Pachter L
    Nucleic Acids Res; 2003 Jul; 31(13):3525-6. PubMed ID: 12824358
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Efficient algorithms and software for detection of full-length LTR retrotransposons.
    Kalyanaraman A; Aluru S
    Proc IEEE Comput Syst Bioinform Conf; 2005; ():56-64. PubMed ID: 16447962
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Annotating regulatory DNA based on man-mouse genomic comparison.
    Dieterich C; Cusack B; Wang H; Rateitschak K; Krause A; Vingron M
    Bioinformatics; 2002; 18 Suppl 2():S84-90. PubMed ID: 12385988
    [TBL] [Abstract][Full Text] [Related]  

  • 20. OrthoFocus: program for identification of orthologs in multiple genomes in family-focused studies.
    Ivliev AE; Sergeeva MG
    J Bioinform Comput Biol; 2008 Aug; 6(4):811-24. PubMed ID: 18763744
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.