154 related articles for article (PubMed ID: 12497602)
1. Exact rotamer optimization for protein design.
Gordon DB; Hom GK; Mayo SL; Pierce NA
J Comput Chem; 2003 Jan; 24(2):232-43. PubMed ID: 12497602
[TBL] [Abstract][Full Text] [Related]
2. Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization.
Desmet J; Spriet J; Lasters I
Proteins; 2002 Jul; 48(1):31-43. PubMed ID: 12012335
[TBL] [Abstract][Full Text] [Related]
3. Preprocessing of rotamers for protein design calculations.
Shah PS; Hom GK; Mayo SL
J Comput Chem; 2004 Nov; 25(14):1797-800. PubMed ID: 15362137
[TBL] [Abstract][Full Text] [Related]
4. Dead-end elimination with backbone flexibility.
Georgiev I; Donald BR
Bioinformatics; 2007 Jul; 23(13):i185-94. PubMed ID: 17646295
[TBL] [Abstract][Full Text] [Related]
5. Dramatic performance enhancements for the FASTER optimization algorithm.
Allen BD; Mayo SL
J Comput Chem; 2006 Jul; 27(10):1071-5. PubMed ID: 16685715
[TBL] [Abstract][Full Text] [Related]
6. Beyond the rotamer library: genetic algorithm combined with the disturbing mutation process for upbuilding protein side-chains.
Liu Z; Jiang L; Gao Y; Liang S; Chen H; Han Y; Lai L
Proteins; 2003 Jan; 50(1):49-62. PubMed ID: 12471599
[TBL] [Abstract][Full Text] [Related]
7. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
Fromer M; Yanover C
Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
[TBL] [Abstract][Full Text] [Related]
8. SHARPEN-systematic hierarchical algorithms for rotamers and proteins on an extended network.
Loksha IV; Maiolo JR; Hong CW; Ng A; Snow CD
J Comput Chem; 2009 Apr; 30(6):999-1005. PubMed ID: 19170085
[TBL] [Abstract][Full Text] [Related]
9. Computational protein design with side-chain conformational entropy.
Sciretti D; Bruscolini P; Pelizzola A; Pretti M; Jaramillo A
Proteins; 2009 Jan; 74(1):176-91. PubMed ID: 18618711
[TBL] [Abstract][Full Text] [Related]
10. Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
Georgiev I; Lilien RH; Donald BR
Bioinformatics; 2006 Jul; 22(14):e174-83. PubMed ID: 16873469
[TBL] [Abstract][Full Text] [Related]
11. Identification of catalytic residues from protein structure using support vector machine with sequence and structural features.
Pugalenthi G; Kumar KK; Suganthan PN; Gangal R
Biochem Biophys Res Commun; 2008 Mar; 367(3):630-4. PubMed ID: 18206645
[TBL] [Abstract][Full Text] [Related]
12. A search algorithm for fixed-composition protein design.
Hom GK; Mayo SL
J Comput Chem; 2006 Feb; 27(3):375-8. PubMed ID: 16380943
[TBL] [Abstract][Full Text] [Related]
13. Computing van der Waals energies in the context of the rotamer approximation.
Grigoryan G; Ochoa A; Keating AE
Proteins; 2007 Sep; 68(4):863-78. PubMed ID: 17554777
[TBL] [Abstract][Full Text] [Related]
14. A quantum chemical method for rapid optimization of protein structures.
Wada M; Sakurai M
J Comput Chem; 2005 Jan; 26(2):160-8. PubMed ID: 15586398
[TBL] [Abstract][Full Text] [Related]
15. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
Gao Y; Douguet D; Tovchigrechko A; Vakser IA
Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
[TBL] [Abstract][Full Text] [Related]
16. Side-chain rotamer transitions at protein-protein interfaces.
Guharoy M; Janin J; Robert CH
Proteins; 2010 Nov; 78(15):3219-25. PubMed ID: 20737439
[TBL] [Abstract][Full Text] [Related]
17. Residue-rotamer-reduction algorithm for the protein side-chain conformation problem.
Xie W; Sahinidis NV
Bioinformatics; 2006 Jan; 22(2):188-94. PubMed ID: 16278239
[TBL] [Abstract][Full Text] [Related]
18. Docking unbound proteins with MIAX: a novel algorithm for protein-protein soft docking.
Del Carpio Munoz CA; Peissker T; Yoshimori A; Ichiishi E
Genome Inform; 2003; 14():238-49. PubMed ID: 15706538
[TBL] [Abstract][Full Text] [Related]
19. Evolutionary protein stabilization in comparison with computational design.
Wunderlich M; Martin A; Staab CA; Schmid FX
J Mol Biol; 2005 Sep; 351(5):1160-8. PubMed ID: 16051264
[TBL] [Abstract][Full Text] [Related]
20. An efficient algorithm for multistate protein design based on FASTER.
Allen BD; Mayo SL
J Comput Chem; 2010 Apr; 31(5):904-16. PubMed ID: 19637210
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]