These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

149 related articles for article (PubMed ID: 12497602)

  • 1. Exact rotamer optimization for protein design.
    Gordon DB; Hom GK; Mayo SL; Pierce NA
    J Comput Chem; 2003 Jan; 24(2):232-43. PubMed ID: 12497602
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization.
    Desmet J; Spriet J; Lasters I
    Proteins; 2002 Jul; 48(1):31-43. PubMed ID: 12012335
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Preprocessing of rotamers for protein design calculations.
    Shah PS; Hom GK; Mayo SL
    J Comput Chem; 2004 Nov; 25(14):1797-800. PubMed ID: 15362137
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Dead-end elimination with backbone flexibility.
    Georgiev I; Donald BR
    Bioinformatics; 2007 Jul; 23(13):i185-94. PubMed ID: 17646295
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Dramatic performance enhancements for the FASTER optimization algorithm.
    Allen BD; Mayo SL
    J Comput Chem; 2006 Jul; 27(10):1071-5. PubMed ID: 16685715
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Beyond the rotamer library: genetic algorithm combined with the disturbing mutation process for upbuilding protein side-chains.
    Liu Z; Jiang L; Gao Y; Liang S; Chen H; Han Y; Lai L
    Proteins; 2003 Jan; 50(1):49-62. PubMed ID: 12471599
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.
    Fromer M; Yanover C
    Proteins; 2009 May; 75(3):682-705. PubMed ID: 19003998
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SHARPEN-systematic hierarchical algorithms for rotamers and proteins on an extended network.
    Loksha IV; Maiolo JR; Hong CW; Ng A; Snow CD
    J Comput Chem; 2009 Apr; 30(6):999-1005. PubMed ID: 19170085
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computational protein design with side-chain conformational entropy.
    Sciretti D; Bruscolini P; Pelizzola A; Pretti M; Jaramillo A
    Proteins; 2009 Jan; 74(1):176-91. PubMed ID: 18618711
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
    Georgiev I; Lilien RH; Donald BR
    Bioinformatics; 2006 Jul; 22(14):e174-83. PubMed ID: 16873469
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Identification of catalytic residues from protein structure using support vector machine with sequence and structural features.
    Pugalenthi G; Kumar KK; Suganthan PN; Gangal R
    Biochem Biophys Res Commun; 2008 Mar; 367(3):630-4. PubMed ID: 18206645
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A search algorithm for fixed-composition protein design.
    Hom GK; Mayo SL
    J Comput Chem; 2006 Feb; 27(3):375-8. PubMed ID: 16380943
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computing van der Waals energies in the context of the rotamer approximation.
    Grigoryan G; Ochoa A; Keating AE
    Proteins; 2007 Sep; 68(4):863-78. PubMed ID: 17554777
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A quantum chemical method for rapid optimization of protein structures.
    Wada M; Sakurai M
    J Comput Chem; 2005 Jan; 26(2):160-8. PubMed ID: 15586398
    [TBL] [Abstract][Full Text] [Related]  

  • 15. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y; Douguet D; Tovchigrechko A; Vakser IA
    Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Side-chain rotamer transitions at protein-protein interfaces.
    Guharoy M; Janin J; Robert CH
    Proteins; 2010 Nov; 78(15):3219-25. PubMed ID: 20737439
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Residue-rotamer-reduction algorithm for the protein side-chain conformation problem.
    Xie W; Sahinidis NV
    Bioinformatics; 2006 Jan; 22(2):188-94. PubMed ID: 16278239
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Docking unbound proteins with MIAX: a novel algorithm for protein-protein soft docking.
    Del Carpio Munoz CA; Peissker T; Yoshimori A; Ichiishi E
    Genome Inform; 2003; 14():238-49. PubMed ID: 15706538
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Evolutionary protein stabilization in comparison with computational design.
    Wunderlich M; Martin A; Staab CA; Schmid FX
    J Mol Biol; 2005 Sep; 351(5):1160-8. PubMed ID: 16051264
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An efficient algorithm for multistate protein design based on FASTER.
    Allen BD; Mayo SL
    J Comput Chem; 2010 Apr; 31(5):904-16. PubMed ID: 19637210
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.