These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

973 related articles for article (PubMed ID: 12520045)

  • 1. Rfam: an RNA family database.
    Griffiths-Jones S; Bateman A; Marshall M; Khanna A; Eddy SR
    Nucleic Acids Res; 2003 Jan; 31(1):439-41. PubMed ID: 12520045
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Rfam: annotating non-coding RNAs in complete genomes.
    Griffiths-Jones S; Moxon S; Marshall M; Khanna A; Eddy SR; Bateman A
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D121-4. PubMed ID: 15608160
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Rfam 11.0: 10 years of RNA families.
    Burge SW; Daub J; Eberhardt R; Tate J; Barquist L; Nawrocki EP; Eddy SR; Gardner PP; Bateman A
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D226-32. PubMed ID: 23125362
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Non-Coding RNA Analysis Using the Rfam Database.
    Kalvari I; Nawrocki EP; Argasinska J; Quinones-Olvera N; Finn RD; Bateman A; Petrov AI
    Curr Protoc Bioinformatics; 2018 Jun; 62(1):e51. PubMed ID: 29927072
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Rfam 12.0: updates to the RNA families database.
    Nawrocki EP; Burge SW; Bateman A; Daub J; Eberhardt RY; Eddy SR; Floden EW; Gardner PP; Jones TA; Tate J; Finn RD
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D130-7. PubMed ID: 25392425
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Rfam: Wikipedia, clans and the "decimal" release.
    Gardner PP; Daub J; Tate J; Moore BL; Osuch IH; Griffiths-Jones S; Finn RD; Nawrocki EP; Kolbe DL; Eddy SR; Bateman A
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D141-5. PubMed ID: 21062808
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families.
    Kalvari I; Argasinska J; Quinones-Olvera N; Nawrocki EP; Rivas E; Eddy SR; Bateman A; Finn RD; Petrov AI
    Nucleic Acids Res; 2018 Jan; 46(D1):D335-D342. PubMed ID: 29112718
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Rfam: updates to the RNA families database.
    Gardner PP; Daub J; Tate JG; Nawrocki EP; Kolbe DL; Lindgreen S; Wilkinson AC; Finn RD; Griffiths-Jones S; Eddy SR; Bateman A
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D136-40. PubMed ID: 18953034
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Rfam: annotating families of non-coding RNA sequences.
    Daub J; Eberhardt RY; Tate JG; Burge SW
    Methods Mol Biol; 2015; 1269():349-63. PubMed ID: 25577390
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
    Kalvari I; Nawrocki EP; Ontiveros-Palacios N; Argasinska J; Lamkiewicz K; Marz M; Griffiths-Jones S; Toffano-Nioche C; Gautheret D; Weinberg Z; Rivas E; Eddy SR; Finn RD; Bateman A; Petrov AI
    Nucleic Acids Res; 2021 Jan; 49(D1):D192-D200. PubMed ID: 33211869
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CMCompare webserver: comparing RNA families via covariance models.
    Eggenhofer F; Hofacker IL; Höner Zu Siederdissen C
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W499-503. PubMed ID: 23640335
    [TBL] [Abstract][Full Text] [Related]  

  • 12. rfaRm: An R client-side interface to facilitate the analysis of the Rfam database of RNA families.
    Sellés Vidal L; Ayala R; Stan GB; Ledesma-Amaro R
    PLoS One; 2021; 16(1):e0245280. PubMed ID: 33449976
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins.
    Bateman A; Birney E; Durbin R; Eddy SR; Finn RD; Sonnhammer EL
    Nucleic Acids Res; 1999 Jan; 27(1):260-2. PubMed ID: 9847196
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Reconstruction of ancestral RNA sequences under multiple structural constraints.
    Tremblay-Savard O; Reinharz V; Waldispühl J
    BMC Genomics; 2016 Nov; 17(Suppl 10):862. PubMed ID: 28185557
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Annotating non-coding RNAs with Rfam.
    Griffiths-Jones S
    Curr Protoc Bioinformatics; 2005 Apr; Chapter 12():12.5.1-12.5.12. PubMed ID: 18428745
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families.
    Barquist L; Burge SW; Gardner PP
    Curr Protoc Bioinformatics; 2016 Jun; 54():12.13.1-12.13.25. PubMed ID: 27322404
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MARS and RNAcmap3: The Master Database of All Possible RNA Sequences Integrated with RNAcmap for RNA Homology Search.
    Chen K; Litfin T; Singh J; Zhan J; Zhou Y
    Genomics Proteomics Bioinformatics; 2024 May; 22(1):. PubMed ID: 38872612
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ambivalent covariance models.
    Janssen S; Giegerich R
    BMC Bioinformatics; 2015 May; 16():178. PubMed ID: 26017195
    [TBL] [Abstract][Full Text] [Related]  

  • 19. BlastR--fast and accurate database searches for non-coding RNAs.
    Bussotti G; Raineri E; Erb I; Zytnicki M; Wilm A; Beaudoing E; Bucher P; Notredame C
    Nucleic Acids Res; 2011 Sep; 39(16):6886-95. PubMed ID: 21624887
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNAcentral: an international database of ncRNA sequences.
    ; Petrov AI; Kay SJE; Gibson R; Kulesha E; Staines D; Bruford EA; Wright MW; Burge S; Finn RD; Kersey PJ; Cochrane G; Bateman A; Griffiths-Jones S; Harrow J; Chan PP; Lowe TM; Zwieb CW; Wower J; Williams KP; Hudson CM; Gutell R; Clark MB; Dinger M; Quek XC; Bujnicki JM; Chua NH; Liu J; Wang H; Skogerbø G; Zhao Y; Chen R; Zhu W; Cole JR; Chai B; Huang HD; Huang HY; Cherry JM; Hatzigeorgiou A; Pruitt KD
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D123-9. PubMed ID: 25352543
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 49.