These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

243 related articles for article (PubMed ID: 12584134)

  • 1. PCMA: fast and accurate multiple sequence alignment based on profile consistency.
    Pei J; Sadreyev R; Grishin NV
    Bioinformatics; 2003 Feb; 19(3):427-8. PubMed ID: 12584134
    [TBL] [Abstract][Full Text] [Related]  

  • 2. AL2CO: calculation of positional conservation in a protein sequence alignment.
    Pei J; Grishin NV
    Bioinformatics; 2001 Aug; 17(8):700-12. PubMed ID: 11524371
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A comparison of scoring functions for protein sequence profile alignment.
    Edgar RC; Sjölander K
    Bioinformatics; 2004 May; 20(8):1301-8. PubMed ID: 14962936
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
    Sauder JM; Arthur JW; Dunbrack RL
    Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Segment-based multiple sequence alignment.
    Rausch T; Emde AK; Weese D; Döring A; Notredame C; Reinert K
    Bioinformatics; 2008 Aug; 24(16):i187-92. PubMed ID: 18689823
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Multiple sequence alignment based on profile alignment of intermediate sequences.
    Lu Y; Sze SH
    J Comput Biol; 2008 Sep; 15(7):767-77. PubMed ID: 18662101
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PCOAT: positional correlation analysis using multiple methods.
    Qi Y; Grishin NV
    Bioinformatics; 2004 Dec; 20(18):3697-9. PubMed ID: 15271785
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ReformAlign: improved multiple sequence alignments using a profile-based meta-alignment approach.
    Lyras DP; Metzler D
    BMC Bioinformatics; 2014 Aug; 15(1):265. PubMed ID: 25099134
    [TBL] [Abstract][Full Text] [Related]  

  • 9. galaxie--CGI scripts for sequence identification through automated phylogenetic analysis.
    Nilsson RH; Larsson KH; Ursing BM
    Bioinformatics; 2004 Jun; 20(9):1447-52. PubMed ID: 14976034
    [TBL] [Abstract][Full Text] [Related]  

  • 10. QAlign: quality-based multiple alignments with dynamic phylogenetic analysis.
    Sammeth M; Rothgänger J; Esser W; Albert J; Stoye J; Harmsen D
    Bioinformatics; 2003 Aug; 19(12):1592-3. PubMed ID: 12912847
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J; Grishin NV
    Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
    [TBL] [Abstract][Full Text] [Related]  

  • 12. T-Coffee: A novel method for fast and accurate multiple sequence alignment.
    Notredame C; Higgins DG; Heringa J
    J Mol Biol; 2000 Sep; 302(1):205-17. PubMed ID: 10964570
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Grammar-based distance in progressive multiple sequence alignment.
    Russell DJ; Otu HH; Sayood K
    BMC Bioinformatics; 2008 Jul; 9():306. PubMed ID: 18616828
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MUSCLE: multiple sequence alignment with high accuracy and high throughput.
    Edgar RC
    Nucleic Acids Res; 2004; 32(5):1792-7. PubMed ID: 15034147
    [TBL] [Abstract][Full Text] [Related]  

  • 15. R-Coffee: a method for multiple alignment of non-coding RNA.
    Wilm A; Higgins DG; Notredame C
    Nucleic Acids Res; 2008 May; 36(9):e52. PubMed ID: 18420654
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Identifying DNA and protein patterns with statistically significant alignments of multiple sequences.
    Hertz GZ; Stormo GD
    Bioinformatics; 1999; 15(7-8):563-77. PubMed ID: 10487864
    [TBL] [Abstract][Full Text] [Related]  

  • 17. COACH: profile-profile alignment of protein families using hidden Markov models.
    Edgar RC; Sjölander K
    Bioinformatics; 2004 May; 20(8):1309-18. PubMed ID: 14962937
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Prediction of functional specificity determinants from protein sequences using log-likelihood ratios.
    Pei J; Cai W; Kinch LN; Grishin NV
    Bioinformatics; 2006 Jan; 22(2):164-71. PubMed ID: 16278237
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An adaptive and iterative algorithm for refining multiple sequence alignment.
    Wang Y; Li KB
    Comput Biol Chem; 2004 Apr; 28(2):141-8. PubMed ID: 15130542
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Rapid detection, classification and accurate alignment of up to a million or more related protein sequences.
    Neuwald AF
    Bioinformatics; 2009 Aug; 25(15):1869-75. PubMed ID: 19505947
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.