These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

344 related articles for article (PubMed ID: 12589766)

  • 1. An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.
    Kortemme T; Morozov AV; Baker D
    J Mol Biol; 2003 Feb; 326(4):1239-59. PubMed ID: 12589766
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Knowledge-based scoring functions in drug design: 3. A two-dimensional knowledge-based hydrogen-bonding potential for the prediction of protein-ligand interactions.
    Zheng M; Xiong B; Luo C; Li S; Liu X; Shen Q; Li J; Zhu W; Luo X; Jiang H
    J Chem Inf Model; 2011 Nov; 51(11):2994-3004. PubMed ID: 21999432
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Amino/aromatic interactions in proteins: is the evidence stacked against hydrogen bonding?
    Mitchell JB; Nandi CL; McDonald IK; Thornton JM; Price SL
    J Mol Biol; 1994 Jun; 239(2):315-31. PubMed ID: 8196060
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys.
    Chen Y; Kortemme T; Robertson T; Baker D; Varani G
    Nucleic Acids Res; 2004; 32(17):5147-62. PubMed ID: 15459285
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces.
    Jiang L; Kuhlman B; Kortemme T; Baker D
    Proteins; 2005 Mar; 58(4):893-904. PubMed ID: 15651050
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Satisfaction of hydrogen-bonding potential influences the conservation of polar sidechains.
    Worth CL; Blundell TL
    Proteins; 2009 May; 75(2):413-29. PubMed ID: 18837037
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The structural basis of peptide-protein binding strategies.
    London N; Movshovitz-Attias D; Schueler-Furman O
    Structure; 2010 Feb; 18(2):188-99. PubMed ID: 20159464
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Carboxyl group hydrogen bonding in X-ray protein structures analysed using neutron studies on amino acids.
    Ramanadham M; Jakkal VS; Chidambaram R
    FEBS Lett; 1993 Jun; 323(3):203-6. PubMed ID: 8500611
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.
    Liu S; Zhang C; Zhou H; Zhou Y
    Proteins; 2004 Jul; 56(1):93-101. PubMed ID: 15162489
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Potential functions for hydrogen bonds in protein structure prediction and design.
    Morozov AV; Kortemme T
    Adv Protein Chem; 2005; 72():1-38. PubMed ID: 16581371
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Insufficiently dehydrated hydrogen bonds as determinants of protein interactions.
    Fernández A; Scheraga HA
    Proc Natl Acad Sci U S A; 2003 Jan; 100(1):113-8. PubMed ID: 12518060
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Satisfying hydrogen bonding potential in proteins.
    McDonald IK; Thornton JM
    J Mol Biol; 1994 May; 238(5):777-93. PubMed ID: 8182748
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Hydration of protein-protein interfaces.
    Rodier F; Bahadur RP; Chakrabarti P; Janin J
    Proteins; 2005 Jul; 60(1):36-45. PubMed ID: 15856483
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations.
    Morozov AV; Kortemme T; Tsemekhman K; Baker D
    Proc Natl Acad Sci U S A; 2004 May; 101(18):6946-51. PubMed ID: 15118103
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Short hydrogen bonds in proteins.
    Rajagopal S; Vishveshwara S
    FEBS J; 2005 Apr; 272(8):1819-32. PubMed ID: 15819878
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A simple physical model for the prediction and design of protein-DNA interactions.
    Havranek JJ; Duarte CM; Baker D
    J Mol Biol; 2004 Nov; 344(1):59-70. PubMed ID: 15504402
    [TBL] [Abstract][Full Text] [Related]  

  • 17. N-H...O, O-H...O, and C-H...O hydrogen bonds in protein-ligand complexes: strong and weak interactions in molecular recognition.
    Sarkhel S; Desiraju GR
    Proteins; 2004 Feb; 54(2):247-59. PubMed ID: 14696187
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Cation-pi interactions in protein-protein interfaces.
    Crowley PB; Golovin A
    Proteins; 2005 May; 59(2):231-9. PubMed ID: 15726638
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Design of ferrocene-dipeptide bioorganometallic conjugates to induce chirality-organized structures.
    Moriuchi T; Hirao T
    Acc Chem Res; 2010 Jul; 43(7):1040-51. PubMed ID: 20377253
    [TBL] [Abstract][Full Text] [Related]  

  • 20. An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.
    Zhang C; Liu S; Zhou H; Zhou Y
    Protein Sci; 2004 Feb; 13(2):400-11. PubMed ID: 14739325
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 18.