These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

97 related articles for article (PubMed ID: 12595705)

  • 1. Automated tracing of electron-density maps of proteins.
    Oldfield TJ
    Acta Crystallogr D Biol Crystallogr; 2003 Mar; 59(Pt 3):483-91. PubMed ID: 12595705
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Automated protein model building combined with iterative structure refinement.
    Perrakis A; Morris R; Lamzin VS
    Nat Struct Biol; 1999 May; 6(5):458-63. PubMed ID: 10331874
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A probabilistic approach to protein backbone tracing in electron density maps.
    DiMaio F; Shavlik J; Phillips GN
    Bioinformatics; 2006 Jul; 22(14):e81-9. PubMed ID: 16873525
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A Structural-informatics approach for tracing beta-sheets: building pseudo-C(alpha) traces for beta-strands in intermediate-resolution density maps.
    Kong Y; Zhang X; Baker TS; Ma J
    J Mol Biol; 2004 May; 339(1):117-30. PubMed ID: 15123425
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Pattern-recognition methods to identify secondary structure within X-ray crystallographic electron-density maps.
    Oldfield T
    Acta Crystallogr D Biol Crystallogr; 2002 Mar; 58(Pt 3):487-93. PubMed ID: 11856835
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Automated crystallographic ligand building using the medial axis transform of an electron-density isosurface.
    Aishima J; Russel DS; Guibas LJ; Adams PD; Brunger AT
    Acta Crystallogr D Biol Crystallogr; 2005 Oct; 61(Pt 10):1354-63. PubMed ID: 16204887
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Automatic modeling of protein backbones in electron-density maps via prediction of Calpha coordinates.
    Ioerger TR; Sacchettini JC
    Acta Crystallogr D Biol Crystallogr; 2002 Dec; 58(Pt 12):2043-54. PubMed ID: 12454463
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The Buccaneer software for automated model building. 1. Tracing protein chains.
    Cowtan K
    Acta Crystallogr D Biol Crystallogr; 2006 Sep; 62(Pt 9):1002-11. PubMed ID: 16929101
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RCrane: semi-automated RNA model building.
    Keating KS; Pyle AM
    Acta Crystallogr D Biol Crystallogr; 2012 Aug; 68(Pt 8):985-95. PubMed ID: 22868764
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Rapid chain tracing of polypeptide backbones in electron-density maps.
    Terwilliger TC
    Acta Crystallogr D Biol Crystallogr; 2010 Mar; 66(Pt 3):285-94. PubMed ID: 20179340
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ConfMatch: automating electron-density map interpretation by matching conformations.
    Wang CE
    Acta Crystallogr D Biol Crystallogr; 2000 Dec; 56(Pt 12):1591-611. PubMed ID: 11092926
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Automation and assessment of de novo modeling with Pathwalking in near atomic resolution cryoEM density maps.
    Chen M; Baker ML
    J Struct Biol; 2018 Dec; 204(3):555-563. PubMed ID: 30237066
    [TBL] [Abstract][Full Text] [Related]  

  • 13. De novo main-chain modeling for EM maps using MAINMAST.
    Terashi G; Kihara D
    Nat Commun; 2018 Apr; 9(1):1618. PubMed ID: 29691408
    [TBL] [Abstract][Full Text] [Related]  

  • 14. On the possibility of the observation of valence electron density for individual bonds in proteins in conventional difference maps.
    Afonine PV; Lunin VY; Muzet N; Urzhumtsev A
    Acta Crystallogr D Biol Crystallogr; 2004 Feb; 60(Pt 2):260-74. PubMed ID: 14747702
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Rapid model building of alpha-helices in electron-density maps.
    Terwilliger TC
    Acta Crystallogr D Biol Crystallogr; 2010 Mar; 66(Pt 3):268-75. PubMed ID: 20179338
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Identifying non-crystallographic symmetry in protein electron-density maps: a feature-based approach.
    Pai R; Sacchettini J; Ioerger T
    Acta Crystallogr D Biol Crystallogr; 2006 Sep; 62(Pt 9):1012-21. PubMed ID: 16929102
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A database method for automated map interpretation in protein crystallography.
    Diller DJ; Redinbo MR; Pohl E; Hol WG
    Proteins; 1999 Sep; 36(4):526-41. PubMed ID: 10450094
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Determining protein structure from electron-density maps using pattern matching.
    Holton T; Ioerger TR; Christopher JA; Sacchettini JC
    Acta Crystallogr D Biol Crystallogr; 2000 Jun; 56(Pt 6):722-34. PubMed ID: 10818349
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A rapid method for positioning small flexible molecules, nucleic acids, and large protein fragments in experimental electron density maps.
    Diller DJ; Pohl E; Redinbo MR; Hovey BT; Hol WG
    Proteins; 1999 Sep; 36(4):512-25. PubMed ID: 10450093
    [TBL] [Abstract][Full Text] [Related]  

  • 20. De Novo modeling in cryo-EM density maps with Pathwalking.
    Chen M; Baldwin PR; Ludtke SJ; Baker ML
    J Struct Biol; 2016 Dec; 196(3):289-298. PubMed ID: 27436409
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.