These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

173 related articles for article (PubMed ID: 12611804)

  • 1. Statistical alignment based on fragment insertion and deletion models.
    Metzler D
    Bioinformatics; 2003 Mar; 19(4):490-9. PubMed ID: 12611804
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Using evolutionary Expectation Maximization to estimate indel rates.
    Holmes I
    Bioinformatics; 2005 May; 21(10):2294-300. PubMed ID: 15731213
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Statistical alignment with a sequence evolution model allowing rate heterogeneity along the sequence.
    Arribas-Gil A; Metzler D; Plouhinec JL
    IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(2):281-95. PubMed ID: 19407352
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Evolutionary HMMs: a Bayesian approach to multiple alignment.
    Holmes I; Bruno WJ
    Bioinformatics; 2001 Sep; 17(9):803-20. PubMed ID: 11590097
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment.
    Kim J; Sinha S
    Bioinformatics; 2007 Feb; 23(3):289-97. PubMed ID: 17110370
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Using guide trees to construct multiple-sequence evolutionary HMMs.
    Holmes I
    Bioinformatics; 2003; 19 Suppl 1():i147-57. PubMed ID: 12855451
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Fast statistical alignment.
    Bradley RK; Roberts A; Smoot M; Juvekar S; Do J; Dewey C; Holmes I; Pachter L
    PLoS Comput Biol; 2009 May; 5(5):e1000392. PubMed ID: 19478997
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Pair hidden Markov models on tree structures.
    Sakakibara Y
    Bioinformatics; 2003; 19 Suppl 1():i232-40. PubMed ID: 12855464
    [TBL] [Abstract][Full Text] [Related]  

  • 10. COACH: profile-profile alignment of protein families using hidden Markov models.
    Edgar RC; Sjölander K
    Bioinformatics; 2004 May; 20(8):1309-18. PubMed ID: 14962937
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Stochastic pairwise alignments.
    Mückstein U; Hofacker IL; Stadler PF
    Bioinformatics; 2002; 18 Suppl 2():S153-60. PubMed ID: 12385998
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DNA assembly with gaps (Dawg): simulating sequence evolution.
    Cartwright RA
    Bioinformatics; 2005 Nov; 21 Suppl 3():iii31-8. PubMed ID: 16306390
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
    Matsui H; Sato K; Sakakibara Y
    Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ngila: global pairwise alignments with logarithmic and affine gap costs.
    Cartwright RA
    Bioinformatics; 2007 Jun; 23(11):1427-8. PubMed ID: 17387111
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Rose: generating sequence families.
    Stoye J; Evers D; Meyer F
    Bioinformatics; 1998; 14(2):157-63. PubMed ID: 9545448
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An algorithm for progressive multiple alignment of sequences with insertions.
    Löytynoja A; Goldman N
    Proc Natl Acad Sci U S A; 2005 Jul; 102(30):10557-62. PubMed ID: 16000407
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.
    Husmeier D
    Bioinformatics; 2005 Sep; 21 Suppl 2():ii166-72. PubMed ID: 16204097
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Probabilistic whole-genome alignments reveal high indel rates in the human and mouse genomes.
    Lunter G
    Bioinformatics; 2007 Jul; 23(13):i289-96. PubMed ID: 17646308
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ReAlignerV: web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequences.
    Iwama H; Hori Y; Matsumoto K; Murao K; Ishida T
    BMC Bioinformatics; 2008 Feb; 9():112. PubMed ID: 18294369
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Phylocomposer and phylodirector: analysis and visualization of transducer indel models.
    Holmes I
    Bioinformatics; 2007 Dec; 23(23):3263-4. PubMed ID: 17804439
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.