333 related articles for article (PubMed ID: 12627170)
21. Eukaryotic transcription factor binding sites--modeling and integrative search methods.
Hannenhalli S
Bioinformatics; 2008 Jun; 24(11):1325-31. PubMed ID: 18426806
[TBL] [Abstract][Full Text] [Related]
22. A graph-based approach to systematically reconstruct human transcriptional regulatory modules.
Yan X; Mehan MR; Huang Y; Waterman MS; Yu PS; Zhou XJ
Bioinformatics; 2007 Jul; 23(13):i577-86. PubMed ID: 17646346
[TBL] [Abstract][Full Text] [Related]
23. Method for identifying transcription factor binding sites in yeast.
Tsai HK; Huang GT; Chou MY; Lu HH; Li WH
Bioinformatics; 2006 Jul; 22(14):1675-81. PubMed ID: 16644789
[TBL] [Abstract][Full Text] [Related]
24. Genome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.
Kim SY; Kim Y
BMC Bioinformatics; 2006 Jul; 7():330. PubMed ID: 16817975
[TBL] [Abstract][Full Text] [Related]
25. Computational identification of transcription factor binding sites via a transcription-factor-centric clustering (TFCC) algorithm.
Zhu Z; Pilpel Y; Church GM
J Mol Biol; 2002 Apr; 318(1):71-81. PubMed ID: 12054769
[TBL] [Abstract][Full Text] [Related]
26. PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.
Siddharthan R; Siggia ED; van Nimwegen E
PLoS Comput Biol; 2005 Dec; 1(7):e67. PubMed ID: 16477324
[TBL] [Abstract][Full Text] [Related]
27. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.
Hughes JD; Estep PW; Tavazoie S; Church GM
J Mol Biol; 2000 Mar; 296(5):1205-14. PubMed ID: 10698627
[TBL] [Abstract][Full Text] [Related]
28. Comparative approach to analysis of regulation in complete genomes: multidrug resistance systems in gamma-proteobacteria.
Rodionov DA; Gelfand MS; Mironov AA; Rakhmaninova AB
J Mol Microbiol Biotechnol; 2001 Apr; 3(2):319-24. PubMed ID: 11321589
[TBL] [Abstract][Full Text] [Related]
29. MatInspector and beyond: promoter analysis based on transcription factor binding sites.
Cartharius K; Frech K; Grote K; Klocke B; Haltmeier M; Klingenhoff A; Frisch M; Bayerlein M; Werner T
Bioinformatics; 2005 Jul; 21(13):2933-42. PubMed ID: 15860560
[TBL] [Abstract][Full Text] [Related]
30. Modeling the combinatorial functions of multiple transcription factors.
Yeang CH; Jaakkola T
J Comput Biol; 2006 Mar; 13(2):463-80. PubMed ID: 16597252
[TBL] [Abstract][Full Text] [Related]
31. Heterogeneity in DNA multiple alignments: modeling, inference, and applications in motif finding.
Chen G; Zhou Q
Biometrics; 2010 Sep; 66(3):694-704. PubMed ID: 19995355
[TBL] [Abstract][Full Text] [Related]
32. MOPAC: motif finding by preprocessing and agglomerative clustering from microarrays.
Ganesh R; Siegele DA; Ioerger TR
Pac Symp Biocomput; 2003; ():41-52. PubMed ID: 12603016
[TBL] [Abstract][Full Text] [Related]
33. Discovery of sequence motifs related to coexpression of genes using evolutionary computation.
Fogel GB; Weekes DG; Varga G; Dow ER; Harlow HB; Onyia JE; Su C
Nucleic Acids Res; 2004; 32(13):3826-35. PubMed ID: 15266008
[TBL] [Abstract][Full Text] [Related]
34. Conservation of the biotin regulon and the BirA regulatory signal in Eubacteria and Archaea.
Rodionov DA; Mironov AA; Gelfand MS
Genome Res; 2002 Oct; 12(10):1507-16. PubMed ID: 12368242
[TBL] [Abstract][Full Text] [Related]
35. Identification of transcription factor binding sites in the human genome sequence.
Levy S; Hannenhalli S
Mamm Genome; 2002 Sep; 13(9):510-4. PubMed ID: 12370781
[TBL] [Abstract][Full Text] [Related]
36. Cluster analysis and promoter modelling as bioinformatics tools for the identification of target genes from expression array data.
Werner T
Pharmacogenomics; 2001 Feb; 2(1):25-36. PubMed ID: 11258194
[TBL] [Abstract][Full Text] [Related]
37. Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
Wang T; Stormo GD
Bioinformatics; 2003 Dec; 19(18):2369-80. PubMed ID: 14668220
[TBL] [Abstract][Full Text] [Related]
38. Inference of transcriptional regulation using gene expression data from the bovine and human genomes.
Zadissa A; McEwan JC; Brown CM
BMC Genomics; 2007 Aug; 8():265. PubMed ID: 17683551
[TBL] [Abstract][Full Text] [Related]
39. In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon.
Erill I; Escribano M; Campoy S; Barbé J
Bioinformatics; 2003 Nov; 19(17):2225-36. PubMed ID: 14630651
[TBL] [Abstract][Full Text] [Related]
40. Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures.
Chowdhary R; Tan SL; Ali RA; Boerlage B; Wong L; Bajic VB
Bioinformatics; 2006 Sep; 22(18):2310-2. PubMed ID: 16613910
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]