BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

272 related articles for article (PubMed ID: 12706730)

  • 1. Exhaustive enumeration of protein domain families.
    Heger A; Holm L
    J Mol Biol; 2003 May; 328(3):749-67. PubMed ID: 12706730
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Automated protein sequence database classification. II. Delineation Of domain boundaries from sequence similarities.
    Gracy J; Argos P
    Bioinformatics; 1998; 14(2):174-87. PubMed ID: 9545450
    [TBL] [Abstract][Full Text] [Related]  

  • 3. EVEREST: automatic identification and classification of protein domains in all protein sequences.
    Portugaly E; Harel A; Linial N; Linial M
    BMC Bioinformatics; 2006 Jun; 7():277. PubMed ID: 16749920
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SUPFAM--a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes.
    Pandit SB; Gosar D; Abhiman S; Sujatha S; Dixit SS; Mhatre NS; Sowdhamini R; Srinivasan N
    Nucleic Acids Res; 2002 Jan; 30(1):289-93. PubMed ID: 11752317
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Pfam: a comprehensive database of protein domain families based on seed alignments.
    Sonnhammer EL; Eddy SR; Durbin R
    Proteins; 1997 Jul; 28(3):405-20. PubMed ID: 9223186
    [TBL] [Abstract][Full Text] [Related]  

  • 6. ADDA: a domain database with global coverage of the protein universe.
    Heger A; Wilton CA; Sivakumar A; Holm L
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D188-91. PubMed ID: 15608174
    [TBL] [Abstract][Full Text] [Related]  

  • 7. DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins.
    Park J; Teichmann SA
    Bioinformatics; 1998; 14(2):144-50. PubMed ID: 9545446
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ProClust: improved clustering of protein sequences with an extended graph-based approach.
    Pipenbacher P; Schliep A; Schneckener S; Schönhuth A; Schomburg D; Schrader R
    Bioinformatics; 2002; 18 Suppl 2():S182-91. PubMed ID: 12386002
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation.
    Russo ET; Laio A; Punta M
    BMC Bioinformatics; 2021 Mar; 22(1):121. PubMed ID: 33711918
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3.
    Dietmann S; Park J; Notredame C; Heger A; Lappe M; Holm L
    Nucleic Acids Res; 2001 Jan; 29(1):55-7. PubMed ID: 11125048
    [TBL] [Abstract][Full Text] [Related]  

  • 11. InterPro, progress and status in 2005.
    Mulder NJ; Apweiler R; Attwood TK; Bairoch A; Bateman A; Binns D; Bradley P; Bork P; Bucher P; Cerutti L; Copley R; Courcelle E; Das U; Durbin R; Fleischmann W; Gough J; Haft D; Harte N; Hulo N; Kahn D; Kanapin A; Krestyaninova M; Lonsdale D; Lopez R; Letunic I; Madera M; Maslen J; McDowall J; Mitchell A; Nikolskaya AN; Orchard S; Pagni M; Ponting CP; Quevillon E; Selengut J; Sigrist CJ; Silventoinen V; Studholme DJ; Vaughan R; Wu CH
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D201-5. PubMed ID: 15608177
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A comprehensive and non-redundant database of protein domain movements.
    Qi G; Lee R; Hayward S
    Bioinformatics; 2005 Jun; 21(12):2832-8. PubMed ID: 15802286
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Protein folds and families: sequence and structure alignments.
    Holm L; Sander C
    Nucleic Acids Res; 1999 Jan; 27(1):244-7. PubMed ID: 9847191
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Pfam: multiple sequence alignments and HMM-profiles of protein domains.
    Sonnhammer EL; Eddy SR; Birney E; Bateman A; Durbin R
    Nucleic Acids Res; 1998 Jan; 26(1):320-2. PubMed ID: 9399864
    [TBL] [Abstract][Full Text] [Related]  

  • 15. On the quality of tree-based protein classification.
    Lazareva-Ulitsky B; Diemer K; Thomas PD
    Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MACHOS: Markov clusters of homologous subsequences.
    Wong S; Ragan MA
    Bioinformatics; 2008 Jul; 24(13):i77-85. PubMed ID: 18586748
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Identification of Protein Homologs and Domain Boundaries by Iterative Sequence Alignment.
    Schaeffer D; Grishin NV
    Methods Mol Biol; 2019; 1851():277-286. PubMed ID: 30298403
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparative mapping of sequence-based and structure-based protein domains.
    Zhang Y; Chandonia JM; Ding C; Holbrook SR
    BMC Bioinformatics; 2005 Mar; 6():77. PubMed ID: 15790427
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Towards an automatic classification of protein structural domains based on structural similarity.
    Sam V; Tai CH; Garnier J; Gibrat JF; Lee B; Munson PJ
    BMC Bioinformatics; 2008 Jan; 9():74. PubMed ID: 18237410
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ASTRAL compendium enhancements.
    Chandonia JM; Walker NS; Lo Conte L; Koehl P; Levitt M; Brenner SE
    Nucleic Acids Res; 2002 Jan; 30(1):260-3. PubMed ID: 11752310
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.