These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

260 related articles for article (PubMed ID: 12716127)

  • 1. A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and SEQUEST scores.
    Anderson DC; Li W; Payan DG; Noble WS
    J Proteome Res; 2003; 2(2):137-46. PubMed ID: 12716127
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Artificial neural network analysis for evaluation of peptide MS/MS spectra in proteomics.
    Baczek T; Buciński A; Ivanov AR; Kaliszan R
    Anal Chem; 2004 Mar; 76(6):1726-32. PubMed ID: 15018575
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Optimization of filtering criterion for SEQUEST database searching to improve proteome coverage in shotgun proteomics.
    Jiang X; Jiang X; Han G; Ye M; Zou H
    BMC Bioinformatics; 2007 Aug; 8():323. PubMed ID: 17761002
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity.
    Xu T; Park SK; Venable JD; Wohlschlegel JA; Diedrich JK; Cociorva D; Lu B; Liao L; Hewel J; Han X; Wong CCL; Fonslow B; Delahunty C; Gao Y; Shah H; Yates JR
    J Proteomics; 2015 Nov; 129():16-24. PubMed ID: 26171723
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Added value for tandem mass spectrometry shotgun proteomics data validation through isoelectric focusing of peptides.
    Heller M; Ye M; Michel PE; Morier P; Stalder D; Jünger MA; Aebersold R; Reymond F; Rossier JS
    J Proteome Res; 2005; 4(6):2273-82. PubMed ID: 16335976
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Targeted Feature Detection for Data-Dependent Shotgun Proteomics.
    Weisser H; Choudhary JS
    J Proteome Res; 2017 Aug; 16(8):2964-2974. PubMed ID: 28673088
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.
    Dworzanski JP; Snyder AP; Chen R; Zhang H; Wishart D; Li L
    Anal Chem; 2004 Apr; 76(8):2355-66. PubMed ID: 15080748
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets.
    Spivak M; Weston J; Bottou L; Käll L; Noble WS
    J Proteome Res; 2009 Jul; 8(7):3737-45. PubMed ID: 19385687
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Using cross-correlation normalized for peptide length to optimize peptide identification in shotgun proteomics.
    Yang B; Ying W; Gong Y; Zhang Y; Cai Y; Dong H; Qian X
    Rapid Commun Mass Spectrom; 2005; 19(20):2983-5. PubMed ID: 16178048
    [No Abstract]   [Full Text] [Related]  

  • 10. Enhanced peptide quantification using spectral count clustering and cluster abundance.
    Lee S; Kwon MS; Lee HJ; Paik YK; Tang H; Lee JK; Park T
    BMC Bioinformatics; 2011 Oct; 12():423. PubMed ID: 22034872
    [TBL] [Abstract][Full Text] [Related]  

  • 11. AMASS: software for automatically validating the quality of MS/MS spectrum from SEQUEST results.
    Sun W; Li F; Wang J; Zheng D; Gao Y
    Mol Cell Proteomics; 2004 Dec; 3(12):1194-9. PubMed ID: 15489460
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Intensity-based protein identification by machine learning from a library of tandem mass spectra.
    Elias JE; Gibbons FD; King OD; Roth FP; Gygi SP
    Nat Biotechnol; 2004 Feb; 22(2):214-9. PubMed ID: 14730315
    [TBL] [Abstract][Full Text] [Related]  

  • 13. [A novel approach for peptide identification by tandem mass spectrometry].
    Sheng QH; Tang HX; Xie T; Wang LS; Ding DF
    Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai); 2003 Aug; 35(8):734-40. PubMed ID: 12897969
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.
    Shen Y; Tolić N; Xie F; Zhao R; Purvine SO; Schepmoes AA; Moore RJ; Anderson GA; Smith RD
    J Proteome Res; 2011 Sep; 10(9):3929-43. PubMed ID: 21678914
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Probability-based validation of protein identifications using a modified SEQUEST algorithm.
    MacCoss MJ; Wu CC; Yates JR
    Anal Chem; 2002 Nov; 74(21):5593-9. PubMed ID: 12433093
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Preprocessing Tandem Mass Spectra Using Genetic Programming for Peptide Identification.
    Azari S; Xue B; Zhang M; Peng L
    J Am Soc Mass Spectrom; 2019 Jul; 30(7):1294-1307. PubMed ID: 31025295
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.
    Halligan BD; Ruotti V; Twigger SN; Greene AS
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W376-81. PubMed ID: 15980493
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Toward high-throughput and reliable peptide identification via MS/MS spectra.
    Liu J
    Methods Mol Biol; 2008; 484():333-44. PubMed ID: 18592190
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations.
    Elias JE; Haas W; Faherty BK; Gygi SP
    Nat Methods; 2005 Sep; 2(9):667-75. PubMed ID: 16118637
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Statistical learning of peptide retention behavior in chromatographic separations: a new kernel-based approach for computational proteomics.
    Pfeifer N; Leinenbach A; Huber CG; Kohlbacher O
    BMC Bioinformatics; 2007 Nov; 8():468. PubMed ID: 18053132
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.