110 related articles for article (PubMed ID: 12717722)
1. Free energy of proton binding in proteins.
Poland D
Biopolymers; 2003 May; 69(1):60-71. PubMed ID: 12717722
[TBL] [Abstract][Full Text] [Related]
2. On the pH dependence of protein stability.
Yang AS; Honig B
J Mol Biol; 1993 May; 231(2):459-74. PubMed ID: 8510157
[TBL] [Abstract][Full Text] [Related]
3. Calculating proton uptake/release and binding free energy taking into account ionization and conformation changes induced by protein-inhibitor association: application to plasmepsin, cathepsin D and endothiapepsin-pepstatin complexes.
Alexov E
Proteins; 2004 Aug; 56(3):572-84. PubMed ID: 15229889
[TBL] [Abstract][Full Text] [Related]
4. Ligand binding distributions in nucleic acids.
Poland D
Biopolymers; 2001 Apr; 58(5):477-90. PubMed ID: 11241219
[TBL] [Abstract][Full Text] [Related]
5. Influence of the membrane potential on the protonation of bacteriorhodopsin: insights from electrostatic calculations into the regulation of proton pumping.
Bombarda E; Becker T; Ullmann GM
J Am Chem Soc; 2006 Sep; 128(37):12129-39. PubMed ID: 16967962
[TBL] [Abstract][Full Text] [Related]
6. Multiple protonation equilibria in electrostatics of protein-protein binding.
Piłat Z; Antosiewicz JM
J Phys Chem B; 2008 Nov; 112(47):15074-85. PubMed ID: 18950218
[TBL] [Abstract][Full Text] [Related]
7. Potential of mean force of water-proton bath and molecular dynamic simulation of proteins at constant pH.
Vorobjev YN
J Comput Chem; 2012 Mar; 33(8):832-42. PubMed ID: 22278814
[TBL] [Abstract][Full Text] [Related]
8. Coupling between conformation and proton binding in proteins.
Vila JA; Ripoll DR; Arnautova YA; Vorobjev YN; Scheraga HA
Proteins; 2005 Oct; 61(1):56-68. PubMed ID: 16080152
[TBL] [Abstract][Full Text] [Related]
9. Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding.
Matta CF; Bader RF
Proteins; 2003 Aug; 52(3):360-99. PubMed ID: 12866050
[TBL] [Abstract][Full Text] [Related]
10. Calculations of pH-dependent binding of proteins to biological membranes.
Mihajlovic M; Lazaridis T
J Phys Chem B; 2006 Feb; 110(7):3375-84. PubMed ID: 16494352
[TBL] [Abstract][Full Text] [Related]
11. Analysis of pH-dependent elements in proteins: geometry and properties of pairs of hydrogen-bonded carboxylic acid side-chains.
Wohlfahrt G
Proteins; 2005 Feb; 58(2):396-406. PubMed ID: 15558575
[TBL] [Abstract][Full Text] [Related]
12. [Molecular dynamics method for proteins with ionization-conformation coupling and equilibrium titration].
Vorob'ev IuN
Mol Biol (Mosk); 2011; 45(2):346-55. PubMed ID: 21634122
[TBL] [Abstract][Full Text] [Related]
13. Evidence for delocalized anticooperative flash induced proton binding as revealed by mutants at the M266His iron ligand in bacterial reaction centers.
Cheap H; Tandori J; Derrien V; Benoit M; de Oliveira P; Koepke J; Lavergne J; Maroti P; Sebban P
Biochemistry; 2007 Apr; 46(15):4510-21. PubMed ID: 17378585
[TBL] [Abstract][Full Text] [Related]
14. Mechanism of proton transfer inhibition by Cd(2+) binding to bacterial reaction centers: determination of the pK(A) of functionally important histidine residues.
Paddock ML; Sagle L; Tehrani A; Beatty JT; Feher G; Okamura MY
Biochemistry; 2003 Aug; 42(32):9626-32. PubMed ID: 12911304
[TBL] [Abstract][Full Text] [Related]
15. Ligand effects on the protein ensemble: unifying the descriptions of ligand binding, local conformational fluctuations, and protein stability.
Whitten ST; García-Moreno BE; Hilser VJ
Methods Cell Biol; 2008; 84():871-91. PubMed ID: 17964952
[TBL] [Abstract][Full Text] [Related]
16. Protein-binding polynomials.
Poland D
J Protein Chem; 2001 Jan; 20(1):91-7. PubMed ID: 11330354
[TBL] [Abstract][Full Text] [Related]
17. Collective relaxation of protein protons at very low magnetic field: a new window on protein dynamics and aggregation.
Luchinat C; Parigi G
J Am Chem Soc; 2007 Feb; 129(5):1055-64. PubMed ID: 17263386
[TBL] [Abstract][Full Text] [Related]
18. Bohr-effect and buffering capacity of hemocyanin from the tarantula E. californicum.
Hellmann N
Biophys Chem; 2004 Apr; 109(1):157-67. PubMed ID: 15059668
[TBL] [Abstract][Full Text] [Related]
19. Interactions of two amphiphilic penicillins with myoglobin in aqueous buffered solutions: a thermodynamic and spectroscopy study.
Taboada P; Fernández Y; Mosquera V
Biomacromolecules; 2004; 5(6):2201-11. PubMed ID: 15530034
[TBL] [Abstract][Full Text] [Related]
20. Energetics and conformational changes upon complexation of a phenothiazine drug with human serum albumin.
Cheema MA; Taboada P; Barbosa S; Castro E; Siddiq M; Mosquera V
Biomacromolecules; 2007 Aug; 8(8):2576-85. PubMed ID: 17592874
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
