BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

110 related articles for article (PubMed ID: 12717722)

  • 21. Protein-protein binding is often associated with changes in protonation state.
    Mason AC; Jensen JH
    Proteins; 2008 Apr; 71(1):81-91. PubMed ID: 17932920
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Protein stabilization by salt bridges: concepts, experimental approaches and clarification of some misunderstandings.
    Bosshard HR; Marti DN; Jelesarov I
    J Mol Recognit; 2004; 17(1):1-16. PubMed ID: 14872533
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Development and validation of an empirical free energy function for calculating protein-protein binding free energy surfaces.
    Audie J
    Biophys Chem; 2009 Feb; 139(2-3):84-91. PubMed ID: 19041170
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Solvated interaction energy (SIE) for scoring protein-ligand binding affinities. 1. Exploring the parameter space.
    Naïm M; Bhat S; Rankin KN; Dennis S; Chowdhury SF; Siddiqi I; Drabik P; Sulea T; Bayly CI; Jakalian A; Purisima EO
    J Chem Inf Model; 2007; 47(1):122-33. PubMed ID: 17238257
    [TBL] [Abstract][Full Text] [Related]  

  • 25. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD; Jewsbury PJ; Essex JW
    J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Competitive sorption of protons and metal cations onto kaolinite: experiments and modeling.
    Heidmann I; Christl I; Leu C; Kretzschmar R
    J Colloid Interface Sci; 2005 Feb; 282(2):270-82. PubMed ID: 15589531
    [TBL] [Abstract][Full Text] [Related]  

  • 27. ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility.
    Meiler J; Baker D
    Proteins; 2006 Nov; 65(3):538-48. PubMed ID: 16972285
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Electrostatic contributions to residue-specific protonation equilibria and proton binding capacitance for a small protein.
    Lindman S; Linse S; Mulder FA; André I
    Biochemistry; 2006 Nov; 45(47):13993-4002. PubMed ID: 17115694
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Water dynamics simulation as a tool for probing proton transfer pathways in a heptahelical membrane protein.
    Kandt C; Gerwert K; Schlitter J
    Proteins; 2005 Feb; 58(3):528-37. PubMed ID: 15609339
    [TBL] [Abstract][Full Text] [Related]  

  • 30. A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.
    Liu S; Zhang C; Zhou H; Zhou Y
    Proteins; 2004 Jul; 56(1):93-101. PubMed ID: 15162489
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Investigation of the conformational lability of serum albumin macromolecules in aqueous solution by the NMR spin-echo method.
    Aksenov SI; Kharchuk OA
    Mol Biol; 1975 Jan; 8(4):494-502. PubMed ID: 236508
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Experimental investigation of the frequency and substitution dependence of negative phi-values in two-state proteins.
    de los Rios MA; Daneshi M; Plaxco KW
    Biochemistry; 2005 Sep; 44(36):12160-7. PubMed ID: 16142914
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Two distinct proton binding sites in the ATP synthase family.
    von Ballmoos C; Dimroth P
    Biochemistry; 2007 Oct; 46(42):11800-9. PubMed ID: 17910472
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Role of opposite charges in protein electrospray ionization mass spectrometry.
    Samalikova M; Grandori R
    J Mass Spectrom; 2003 Sep; 38(9):941-7. PubMed ID: 14505321
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Interactions of cationic ligands and proteins with small nucleic acids: analytic treatment of the large coulombic end effect on binding free energy as a function of salt concentration.
    Shkel IA; Ballin JD; Record MT
    Biochemistry; 2006 Jul; 45(27):8411-26. PubMed ID: 16819840
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Classification of water molecules in protein binding sites.
    Barillari C; Taylor J; Viner R; Essex JW
    J Am Chem Soc; 2007 Mar; 129(9):2577-87. PubMed ID: 17288418
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Fragment-based computation of binding free energies by systematic sampling.
    Clark M; Meshkat S; Talbot GT; Carnevali P; Wiseman JS
    J Chem Inf Model; 2009 Aug; 49(8):1901-13. PubMed ID: 19610599
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Prediction of the orientations of adsorbed protein using an empirical energy function with implicit solvation.
    Sun Y; Welsh WJ; Latour RA
    Langmuir; 2005 Jun; 21(12):5616-26. PubMed ID: 15924498
    [TBL] [Abstract][Full Text] [Related]  

  • 39. PSI-DOCK: towards highly efficient and accurate flexible ligand docking.
    Pei J; Wang Q; Liu Z; Li Q; Yang K; Lai L
    Proteins; 2006 Mar; 62(4):934-46. PubMed ID: 16395666
    [TBL] [Abstract][Full Text] [Related]  

  • 40. The salt-dependence of a protein-ligand interaction: ion-protein binding energetics.
    Waldron TT; Schrift GL; Murphy KP
    J Mol Biol; 2005 Feb; 346(3):895-905. PubMed ID: 15713470
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 6.