334 related articles for article (PubMed ID: 12717729)
1. A unified model for the origin of DNA sequence-directed curvature.
Hud NV; Plavec J
Biopolymers; 2003 May; 69(1):144-58. PubMed ID: 12717729
[TBL] [Abstract][Full Text] [Related]
2. Molecular dynamics simulations of A. T-rich oligomers: sequence-specific binding of Na+ in the minor groove of B-DNA.
Mocci F; Saba G
Biopolymers; 2003 Apr; 68(4):471-85. PubMed ID: 12666173
[TBL] [Abstract][Full Text] [Related]
3. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
McConnell KJ; Beveridge DL
J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
[TBL] [Abstract][Full Text] [Related]
4. Structure of the hydration shells of oligo(dA-dT).oligo(dA-dT) and oligo(dA).oligo(dT) tracts in B-type conformation on the basis of Monte Carlo calculations.
Eisenhaber F; Tumanyan VG; Abagyan RA
Biopolymers; 1990; 30(5-6):563-81. PubMed ID: 2265229
[TBL] [Abstract][Full Text] [Related]
5. 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
Chiu TK; Dickerson RE
J Mol Biol; 2000 Aug; 301(4):915-45. PubMed ID: 10966796
[TBL] [Abstract][Full Text] [Related]
6. The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps.
Goodsell DS; Kaczor-Grzeskowiak M; Dickerson RE
J Mol Biol; 1994 May; 239(1):79-96. PubMed ID: 8196049
[TBL] [Abstract][Full Text] [Related]
7. Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premelting.
Beveridge DL; Dixit SB; Barreiro G; Thayer KM
Biopolymers; 2004 Feb; 73(3):380-403. PubMed ID: 14755574
[TBL] [Abstract][Full Text] [Related]
8. Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations.
Shui X; Sines CC; McFail-Isom L; VanDerveer D; Williams LD
Biochemistry; 1998 Dec; 37(48):16877-87. PubMed ID: 9836580
[TBL] [Abstract][Full Text] [Related]
9. DNA structure: what's in charge?
McConnell KJ; Beveridge DL
J Mol Biol; 2000 Dec; 304(5):803-20. PubMed ID: 11124028
[TBL] [Abstract][Full Text] [Related]
10. A-Tract bending: insights into experimental structures by computational models.
Strahs D; Schlick T
J Mol Biol; 2000 Aug; 301(3):643-63. PubMed ID: 10966775
[TBL] [Abstract][Full Text] [Related]
11. A-tract polarity dominate the curvature in flanking sequences.
Merling A; Sagaydakova N; Haran TE
Biochemistry; 2003 May; 42(17):4978-84. PubMed ID: 12718540
[TBL] [Abstract][Full Text] [Related]
12. Sequence elements responsible for DNA curvature.
Haran TE; Kahn JD; Crothers DM
J Mol Biol; 1994 Nov; 244(2):135-43. PubMed ID: 7966325
[TBL] [Abstract][Full Text] [Related]
13. Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G.
Chiu TK; Kaczor-Grzeskowiak M; Dickerson RE
J Mol Biol; 1999 Sep; 292(3):589-608. PubMed ID: 10497024
[TBL] [Abstract][Full Text] [Related]
14. Atomic-resolution crystal structures of B-DNA reveal specific influences of divalent metal ions on conformation and packing.
Minasov G; Tereshko V; Egli M
J Mol Biol; 1999 Aug; 291(1):83-99. PubMed ID: 10438608
[TBL] [Abstract][Full Text] [Related]
15. The B-DNA dodecamer at high resolution reveals a spine of water on sodium.
Shui X; McFail-Isom L; Hu GG; Williams LD
Biochemistry; 1998 Jun; 37(23):8341-55. PubMed ID: 9622486
[TBL] [Abstract][Full Text] [Related]
16. A DNA dodecamer containing an adenine tract crystallizes in a unique lattice and exhibits a new bend.
DiGabriele AD; Steitz TA
J Mol Biol; 1993 Jun; 231(4):1024-39. PubMed ID: 8515463
[TBL] [Abstract][Full Text] [Related]
17. Helix bending as a factor in protein/DNA recognition.
Dickerson RE; Chiu TK
Biopolymers; 1997; 44(4):361-403. PubMed ID: 9782776
[TBL] [Abstract][Full Text] [Related]
18. Localization of ammonium ions in the minor groove of DNA duplexes in solution and the origin of DNA A-tract bending.
Hud NV; Sklenár V; Feigon J
J Mol Biol; 1999 Feb; 286(3):651-60. PubMed ID: 10024440
[TBL] [Abstract][Full Text] [Related]
19. A-form conformational motifs in ligand-bound DNA structures.
Lu XJ; Shakked Z; Olson WK
J Mol Biol; 2000 Jul; 300(4):819-40. PubMed ID: 10891271
[TBL] [Abstract][Full Text] [Related]
20. [Anisotropic flexibility of DNA depends on the base sequence. Conformation calculations of double-stranded tetranucleotides AAAA:TTTT, (AATT)2, (TTAA)2, GGGG:CCCC, (GGCC)2, (CCGG)2].
Ul'ianov NB; Zhurkin VB
Mol Biol (Mosk); 1984; 18(6):1664-85. PubMed ID: 6521743
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]