These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
99 related articles for article (PubMed ID: 12761386)
1. Fishing new proteins in the twilight zone of genomes: the test case of outer membrane proteins in Escherichia coli K12, Escherichia coli O157:H7, and other Gram-negative bacteria. Casadio R; Fariselli P; Finocchiaro G; Martelli PL Protein Sci; 2003 Jun; 12(6):1158-68. PubMed ID: 12761386 [TBL] [Abstract][Full Text] [Related]
2. Semi-automated fluorogenic PCR assays (TaqMan) forrapid detection of Escherichia coli O157:H7 and other shiga toxigenic E. coli. Sharma VK; Dean-Nystrom EA; Casey TA Mol Cell Probes; 1999 Aug; 13(4):291-302. PubMed ID: 10441202 [TBL] [Abstract][Full Text] [Related]
3. Identification of Yersinia pestis and Escherichia coli strains by whole cell and outer membrane protein extracts with mass spectrometry-based proteomics. Jabbour RE; Wade MM; Deshpande SV; Stanford MF; Wick CH; Zulich AW; Snyder AP J Proteome Res; 2010 Jul; 9(7):3647-55. PubMed ID: 20486690 [TBL] [Abstract][Full Text] [Related]
4. A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins. Bagos PG; Liakopoulos TD; Spyropoulos IC; Hamodrakas SJ BMC Bioinformatics; 2004 Mar; 5():29. PubMed ID: 15070403 [TBL] [Abstract][Full Text] [Related]
5. The beta-barrel finder (BBF) program, allowing identification of outer membrane beta-barrel proteins encoded within prokaryotic genomes. Zhai Y; Saier MH Protein Sci; 2002 Sep; 11(9):2196-207. PubMed ID: 12192075 [TBL] [Abstract][Full Text] [Related]
6. Enterohaemorrhagic Escherichia coli O157 and non-O157 serovars differ in their mechanisms for iron supply. Kresse AU; Rienäcker I; Valle AM; Steinrück H; Claus H; Payne SM; Tschäpe H; Williams PH; Reissbrodt R Int J Med Microbiol; 2007 Feb; 297(1):9-15. PubMed ID: 17224306 [TBL] [Abstract][Full Text] [Related]
7. Detection of LEE 4 region-encoded genes from different enteropathogenic and enterohemorrhagic Escherichia coli serotypes. Mairena EC; Neves BC; Trabulsi LR; Elias WP Curr Microbiol; 2004 Jun; 48(6):412-8. PubMed ID: 15170235 [TBL] [Abstract][Full Text] [Related]
8. TMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins. Garrow AG; Agnew A; Westhead DR BMC Bioinformatics; 2005 Mar; 6():56. PubMed ID: 15769290 [TBL] [Abstract][Full Text] [Related]
9. Localization prediction and structure-based in silico analysis of bacterial proteins: with emphasis on outer membrane proteins. Imai K; Hayat S; Sakiyama N; Fujita N; Tomii K; Elofsson A; Horton P Methods Mol Biol; 2013; 939():115-40. PubMed ID: 23192545 [TBL] [Abstract][Full Text] [Related]
10. Expression and putative roles in attachment of outer membrane proteins of Escherichia coli O157 from planktonic and sessile culture. Rivas L; Fegan N; Dykes GA Foodborne Pathog Dis; 2008 Apr; 5(2):155-64. PubMed ID: 18361684 [TBL] [Abstract][Full Text] [Related]
11. TMBETADISC-RBF: Discrimination of beta-barrel membrane proteins using RBF networks and PSSM profiles. Ou YY; Gromiha MM; Chen SA; Suwa M Comput Biol Chem; 2008 Jun; 32(3):227-31. PubMed ID: 18434251 [TBL] [Abstract][Full Text] [Related]
12. Mucosal antibody responses of colonized cattle to Escherichia coli O157-secreted proteins, flagellin, outer membrane proteins and lipopolysaccharide. Nart P; Holden N; McAteer SP; Wang D; Flockhart AF; Naylor SW; Low JC; Gally DL; Huntley JF FEMS Immunol Med Microbiol; 2008 Jan; 52(1):59-68. PubMed ID: 17995963 [TBL] [Abstract][Full Text] [Related]
13. Highly diverse variable number tandem repeat loci in the E. coli O157:H7 and O55:H7 genomes for high-resolution molecular typing. Keys C; Kemper S; Keim P J Appl Microbiol; 2005; 98(4):928-40. PubMed ID: 15752340 [TBL] [Abstract][Full Text] [Related]
14. A genome rearrangement has orphaned the Escherichia coli K-12 AcpT phosphopantetheinyl transferase from its cognate Escherichia coli O157:H7 substrates. De Lay NR; Cronan JE Mol Microbiol; 2006 Jul; 61(1):232-42. PubMed ID: 16824108 [TBL] [Abstract][Full Text] [Related]
15. Identification of a multicomponent complex required for outer membrane biogenesis in Escherichia coli. Wu T; Malinverni J; Ruiz N; Kim S; Silhavy TJ; Kahne D Cell; 2005 Apr; 121(2):235-45. PubMed ID: 15851030 [TBL] [Abstract][Full Text] [Related]
16. Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. Bagos PG; Liakopoulos TD; Hamodrakas SJ BMC Bioinformatics; 2005 Jan; 6():7. PubMed ID: 15647112 [TBL] [Abstract][Full Text] [Related]
17. Global analysis of genomic texts: the distribution of AGCT tetranucleotides in the Escherichia coli and Bacillus subtilis genomes predicts translational frameshifting and ribosomal hopping in several genes. Hénaut A; Lisacek F; Nitschké P; Moszer I; Danchin A Electrophoresis; 1998 Apr; 19(4):515-27. PubMed ID: 9588797 [TBL] [Abstract][Full Text] [Related]
18. EhaA is a novel autotransporter protein of enterohemorrhagic Escherichia coli O157:H7 that contributes to adhesion and biofilm formation. Wells TJ; Sherlock O; Rivas L; Mahajan A; Beatson SA; Torpdahl M; Webb RI; Allsopp LP; Gobius KS; Gally DL; Schembri MA Environ Microbiol; 2008 Mar; 10(3):589-604. PubMed ID: 18237301 [TBL] [Abstract][Full Text] [Related]
19. Expression, crystallization and preliminary X-ray crystallographic studies of the outer membrane protein OmpW from Escherichia coli. Albrecht R; Zeth K; Söding J; Lupas A; Linke D Acta Crystallogr Sect F Struct Biol Cryst Commun; 2006 Apr; 62(Pt 4):415-8. PubMed ID: 16582500 [TBL] [Abstract][Full Text] [Related]
20. Using codon usage to predict genes origin: is the Escherichia coli outer membrane a patchwork of products from different genomes? Guerdoux-Jamet P; Hénaut A; Nitschké P; Risler JL; Danchin A DNA Res; 1997 Aug; 4(4):257-65. PubMed ID: 9405933 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]