714 related articles for article (PubMed ID: 12779344)
1. Combinatorial determination of sequence specificity for nanomolar DNA-binding hairpin polyamides.
Vashisht Gopal YN; Van Dyke MW
Biochemistry; 2003 Jun; 42(22):6891-903. PubMed ID: 12779344
[TBL] [Abstract][Full Text] [Related]
2. Discrimination of hairpin polyamides with an alpha-substituted-gamma-aminobutyric acid as a 5'-TG-3' reader in DNA minor groove.
Zhang W; Bando T; Sugiyama H
J Am Chem Soc; 2006 Jul; 128(27):8766-76. PubMed ID: 16819870
[TBL] [Abstract][Full Text] [Related]
3. The thermodynamics of polyamide-DNA recognition: hairpin polyamide binding in the minor groove of duplex DNA.
Pilch DS; Poklar N; Baird EE; Dervan PB; Breslauer KJ
Biochemistry; 1999 Feb; 38(7):2143-51. PubMed ID: 10026298
[TBL] [Abstract][Full Text] [Related]
4. Effects of the A.T/T.A degeneracy of pyrrole--imidazole polyamide recognition in the minor groove of DNA.
White S; Baird EE; Dervan PB
Biochemistry; 1996 Sep; 35(38):12532-7. PubMed ID: 8823190
[TBL] [Abstract][Full Text] [Related]
5. Effects of the N-terminal acylamido group of imidazole- and pyrrole-containing polyamides on DNA sequence specificity and binding affinity.
Westrate L; Mackay H; Brown T; Nguyen B; Kluza J; Wilson WD; Lee M; Hartley JA
Biochemistry; 2009 Jun; 48(24):5679-88. PubMed ID: 19419200
[TBL] [Abstract][Full Text] [Related]
6. Targeting the inverted CCAAT box 2 in the topoisomerase IIalpha promoter by JH-37, an imidazole-pyrrole polyamide hairpin: design, synthesis, molecular biology, and biophysical studies.
Henry JA; Le NM; Nguyen B; Howard CM; Bailey SL; Horick SM; Buchmueller KL; Kotecha M; Hochhauser D; Hartley JA; Wilson WD; Lee M
Biochemistry; 2004 Sep; 43(38):12249-57. PubMed ID: 15379563
[TBL] [Abstract][Full Text] [Related]
7. REPSA: general combinatorial approach for identifying preferred ligand-DNA binding sequences.
Van Dyke MW; Van Dyke N; Sunavala-Dossabhoy G
Methods; 2007 Jun; 42(2):118-27. PubMed ID: 17472894
[TBL] [Abstract][Full Text] [Related]
8. Combinatorial identification of a novel consensus sequence for the covalent DNA-binding polyamide tallimustine.
Sunavala-Dossabhoy G; Van Dyke MW
Biochemistry; 2005 Feb; 44(7):2510-22. PubMed ID: 15709763
[TBL] [Abstract][Full Text] [Related]
9. Anti-repression of RNA polymerase II transcription by pyrrole-imidazole polyamides.
Dickinson LA; Trauger JW; Baird EE; Ghazal P; Dervan PB; Gottesfeld JM
Biochemistry; 1999 Aug; 38(33):10801-7. PubMed ID: 10451376
[TBL] [Abstract][Full Text] [Related]
10. DNA-templated dimerization of hairpin polyamides.
Poulin-Kerstien AT; Dervan PB
J Am Chem Soc; 2003 Dec; 125(51):15811-21. PubMed ID: 14677972
[TBL] [Abstract][Full Text] [Related]
11. U-pin polyamide motif for recognition of the DNA minor groove.
Heckel A; Dervan PB
Chemistry; 2003 Jul; 9(14):3353-66. PubMed ID: 12866079
[TBL] [Abstract][Full Text] [Related]
12. Recognition of the four Watson-Crick base pairs in the DNA minor groove by synthetic ligands.
White S; Szewczyk JW; Turner JM; Baird EE; Dervan PB
Nature; 1998 Jan; 391(6666):468-71. PubMed ID: 9461213
[TBL] [Abstract][Full Text] [Related]
13. Identification of preferred distamycin-DNA binding sites by the combinatorial method REPSA.
Hardenbol P; Wang JC; Van Dyke MW
Bioconjug Chem; 1997; 8(5):617-20. PubMed ID: 9327123
[TBL] [Abstract][Full Text] [Related]
14. Importance of minor groove binding zinc fingers within the transcription factor IIIA-DNA complex.
Neely L; Trauger JW; Baird EE; Dervan PB; Gottesfeld JM
J Mol Biol; 1997 Dec; 274(4):439-45. PubMed ID: 9417925
[TBL] [Abstract][Full Text] [Related]
15. Minor groove DNA-protein contacts upstream of a tRNA gene detected with a synthetic DNA binding ligand.
McBryant SJ; Baird EE; Trauger JW; Dervan PB; Gottesfeld JM
J Mol Biol; 1999 Mar; 286(4):973-81. PubMed ID: 10047474
[TBL] [Abstract][Full Text] [Related]
16. A novel assay to determine the sequence preference and affinity of DNA minor groove binding compounds.
Thomas R; Gonzalez C; Roberts C; Botyanszki J; Lou L; Michelotti EF
Nucleic Acids Res; 2004 Jan; 32(1):e8. PubMed ID: 14718553
[TBL] [Abstract][Full Text] [Related]
17. Sequence-specific recognition of DNA in the nucleosome by pyrrole-imidazole polyamides.
Gottesfeld JM; Melander C; Suto RK; Raviol H; Luger K; Dervan PB
J Mol Biol; 2001 Jun; 309(3):615-29. PubMed ID: 11397084
[TBL] [Abstract][Full Text] [Related]
18. Solution structure of the calicheamicin gamma 1I-DNA complex.
Kumar RA; Ikemoto N; Patel DJ
J Mol Biol; 1997 Jan; 265(2):187-201. PubMed ID: 9020982
[TBL] [Abstract][Full Text] [Related]
19. Influence of compound structure on affinity, sequence selectivity, and mode of binding to DNA for unfused aromatic dications related to furamidine.
Nguyen B; Tardy C; Bailly C; Colson P; Houssier C; Kumar A; Boykin DW; Wilson WD
Biopolymers; 2002 Apr; 63(5):281-97. PubMed ID: 11877739
[TBL] [Abstract][Full Text] [Related]
20. Extending the language of DNA molecular recognition by polyamides: unexpected influence of imidazole and pyrrole arrangement on binding affinity and specificity.
Buchmueller KL; Staples AM; Howard CM; Horick SM; Uthe PB; Le NM; Cox KK; Nguyen B; Pacheco KA; Wilson WD; Lee M
J Am Chem Soc; 2005 Jan; 127(2):742-50. PubMed ID: 15643900
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
