BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

215 related articles for article (PubMed ID: 12801878)

  • 1. RASCAL: rapid scanning and correction of multiple sequence alignments.
    Thompson JD; Thierry JC; Poch O
    Bioinformatics; 2003 Jun; 19(9):1155-61. PubMed ID: 12801878
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GOAnno: GO annotation based on multiple alignment.
    Chalmel F; Lardenois A; Thompson JD; Muller J; Sahel JA; Léveillard T; Poch O
    Bioinformatics; 2005 May; 21(9):2095-6. PubMed ID: 15647299
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DbW: automatic update of a functional family-specific multiple alignment.
    Prigent V; Thierry JC; Poch O; Plewniak F
    Bioinformatics; 2005 Apr; 21(8):1437-42. PubMed ID: 15598832
    [TBL] [Abstract][Full Text] [Related]  

  • 4. BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations.
    Bahr A; Thompson JD; Thierry JC; Poch O
    Nucleic Acids Res; 2001 Jan; 29(1):323-6. PubMed ID: 11125126
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
    Thompson JD; Koehl P; Ripp R; Poch O
    Proteins; 2005 Oct; 61(1):127-36. PubMed ID: 16044462
    [TBL] [Abstract][Full Text] [Related]  

  • 6. BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs.
    Thompson JD; Plewniak F; Poch O
    Bioinformatics; 1999 Jan; 15(1):87-8. PubMed ID: 10068696
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Refining multiple sequence alignments with conserved core regions.
    Chakrabarti S; Lanczycki CJ; Panchenko AR; Przytycka TM; Thiessen PA; Bryant SH
    Nucleic Acids Res; 2006; 34(9):2598-606. PubMed ID: 16707662
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SpliVert: A Protein Multiple Sequence Alignment Refinement Method Based on Splitting-Splicing Vertically.
    Zhan Q; Fu Y; Jiang Q; Liu B; Peng J; Wang Y
    Protein Pept Lett; 2020; 27(4):295-302. PubMed ID: 31385760
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Accuracy of structure-based sequence alignment of automatic methods.
    Kim C; Lee B
    BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SATCHMO: sequence alignment and tree construction using hidden Markov models.
    Edgar RC; Sjölander K
    Bioinformatics; 2003 Jul; 19(11):1404-11. PubMed ID: 12874053
    [TBL] [Abstract][Full Text] [Related]  

  • 11. AQUA: automated quality improvement for multiple sequence alignments.
    Muller J; Creevey CJ; Thompson JD; Arendt D; Bork P
    Bioinformatics; 2010 Jan; 26(2):263-5. PubMed ID: 19926669
    [TBL] [Abstract][Full Text] [Related]  

  • 12. COACH: profile-profile alignment of protein families using hidden Markov models.
    Edgar RC; Sjölander K
    Bioinformatics; 2004 May; 20(8):1309-18. PubMed ID: 14962937
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Quality of alignment comparison by COMPASS improves with inclusion of diverse confident homologs.
    Sadreyev RI; Grishin NV
    Bioinformatics; 2004 Apr; 20(6):818-28. PubMed ID: 14751996
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A structure-based method for protein sequence alignment.
    Kann MG; Thiessen PA; Panchenko AR; Schäffer AA; Altschul SF; Bryant SH
    Bioinformatics; 2005 Apr; 21(8):1451-6. PubMed ID: 15613392
    [TBL] [Abstract][Full Text] [Related]  

  • 15. State of the art: refinement of multiple sequence alignments.
    Chakrabarti S; Lanczycki CJ; Panchenko AR; Przytycka TM; Thiessen PA; Bryant SH
    BMC Bioinformatics; 2006 Nov; 7():499. PubMed ID: 17105653
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Optimizing the size of the sequence profiles to increase the accuracy of protein sequence alignments generated by profile-profile algorithms.
    Poleksic A; Fienup M
    Bioinformatics; 2008 May; 24(9):1145-53. PubMed ID: 18337259
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A comparison of scoring functions for protein sequence profile alignment.
    Edgar RC; Sjölander K
    Bioinformatics; 2004 May; 20(8):1301-8. PubMed ID: 14962936
    [TBL] [Abstract][Full Text] [Related]  

  • 18. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J; Grishin NV
    Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Consensus alignment for reliable framework prediction in homology modeling.
    Prasad JC; Comeau SR; Vajda S; Camacho CJ
    Bioinformatics; 2003 Sep; 19(13):1682-91. PubMed ID: 12967965
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multiple alignment by sequence annealing.
    Schwartz AS; Pachter L
    Bioinformatics; 2007 Jan; 23(2):e24-9. PubMed ID: 17237099
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.