237 related articles for article (PubMed ID: 12824319)
1. 3MATRIX and 3MOTIF: a protein structure visualization system for conserved sequence motifs.
Bennett SP; Lu L; Brutlag DL
Nucleic Acids Res; 2003 Jul; 31(13):3328-32. PubMed ID: 12824319
[TBL] [Abstract][Full Text] [Related]
2. 3MOTIF: visualizing conserved protein sequence motifs in the protein structure database.
Bennett SP; Nevill-Manning CG; Brutlag DL
Bioinformatics; 2003 Mar; 19(4):541-2. PubMed ID: 12611811
[TBL] [Abstract][Full Text] [Related]
3. FeatureMap3D--a tool to map protein features and sequence conservation onto homologous structures in the PDB.
Wernersson R; Rapacki K; Staerfeldt HH; Sackett PW; Mølgaard A
Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W84-8. PubMed ID: 16845115
[TBL] [Abstract][Full Text] [Related]
4. Computing motif correlations in proteins.
Horng JT; Huang HD; Wang SH; Chen MY; Huang SL; Hwang JK
J Comput Chem; 2003 Dec; 24(16):2032-43. PubMed ID: 14531057
[TBL] [Abstract][Full Text] [Related]
5. FoldMiner and LOCK 2: protein structure comparison and motif discovery on the web.
Shapiro J; Brutlag D
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W536-41. PubMed ID: 15215444
[TBL] [Abstract][Full Text] [Related]
6. Recent improvements to the PROSITE database.
Hulo N; Sigrist CJ; Le Saux V; Langendijk-Genevaux PS; Bordoli L; Gattiker A; De Castro E; Bucher P; Bairoch A
Nucleic Acids Res; 2004 Jan; 32(Database issue):D134-7. PubMed ID: 14681377
[TBL] [Abstract][Full Text] [Related]
7. PROSITE: a documented database using patterns and profiles as motif descriptors.
Sigrist CJ; Cerutti L; Hulo N; Gattiker A; Falquet L; Pagni M; Bairoch A; Bucher P
Brief Bioinform; 2002 Sep; 3(3):265-74. PubMed ID: 12230035
[TBL] [Abstract][Full Text] [Related]
8. MINER: software for phylogenetic motif identification.
La D; Livesay DR
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W267-70. PubMed ID: 15980467
[TBL] [Abstract][Full Text] [Related]
9. Identifying property based sequence motifs in protein families and superfamilies: application to DNase-1 related endonucleases.
Mathura VS; Schein CH; Braun W
Bioinformatics; 2003 Jul; 19(11):1381-90. PubMed ID: 12874050
[TBL] [Abstract][Full Text] [Related]
10. STAMP: a web tool for exploring DNA-binding motif similarities.
Mahony S; Benos PV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W253-8. PubMed ID: 17478497
[TBL] [Abstract][Full Text] [Related]
11. Motif3D: Relating protein sequence motifs to 3D structure.
Gaulton A; Attwood TK
Nucleic Acids Res; 2003 Jul; 31(13):3333-6. PubMed ID: 12824320
[TBL] [Abstract][Full Text] [Related]
12. eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity.
Su QJ; Lu L; Saxonov S; Brutlag DL
Nucleic Acids Res; 2005 Jan; 33(Database issue):D178-82. PubMed ID: 15608172
[TBL] [Abstract][Full Text] [Related]
13. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
Yang AS; Honig B
J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
[TBL] [Abstract][Full Text] [Related]
14. Predicting functional sites with an automated algorithm suitable for heterogeneous datasets.
La D; Livesay DR
BMC Bioinformatics; 2005 May; 6():116. PubMed ID: 15890082
[TBL] [Abstract][Full Text] [Related]
15. MegaMotifBase: a database of structural motifs in protein families and superfamilies.
Pugalenthi G; Suganthan PN; Sowdhamini R; Chakrabarti S
Nucleic Acids Res; 2008 Jan; 36(Database issue):D218-21. PubMed ID: 17933773
[TBL] [Abstract][Full Text] [Related]
16. The EMOTIF database.
Huang JY; Brutlag DL
Nucleic Acids Res; 2001 Jan; 29(1):202-4. PubMed ID: 11125091
[TBL] [Abstract][Full Text] [Related]
17. GOmotif: A web server for investigating the biological role of protein sequence motifs.
Bristow F; He R; Van Domselaar G
BMC Bioinformatics; 2011 Sep; 12():379. PubMed ID: 21943350
[TBL] [Abstract][Full Text] [Related]
18. seeMotif: exploring and visualizing sequence motifs in 3D structures.
Chang DT; Chien TY; Chen CY
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W552-8. PubMed ID: 19477961
[TBL] [Abstract][Full Text] [Related]
19. SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs.
Chakrabarti S; Anand AP; Bhardwaj N; Pugalenthi G; Sowdhamini R
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W274-6. PubMed ID: 15980468
[TBL] [Abstract][Full Text] [Related]
20. MotViz: a tool for sequence motif prediction in parallel to structural visualization and analyses.
Nawaz MS; Ain QU; Seemab U; Rashid S
Genomics Proteomics Bioinformatics; 2012 Feb; 10(1):35-43. PubMed ID: 22449399
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
