BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

118 related articles for article (PubMed ID: 12824353)

  • 1. CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics.
    Kohli DK; Bachhawat AK
    Nucleic Acids Res; 2003 Jul; 31(13):3501-2. PubMed ID: 12824353
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Multiple sequence alignment with the Clustal series of programs.
    Chenna R; Sugawara H; Koike T; Lopez R; Gibson TJ; Higgins DG; Thompson JD
    Nucleic Acids Res; 2003 Jul; 31(13):3497-500. PubMed ID: 12824352
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Multiple sequence alignment using ClustalW and ClustalX.
    Thompson JD; Gibson TJ; Higgins DG
    Curr Protoc Bioinformatics; 2002 Aug; Chapter 2():Unit 2.3. PubMed ID: 18792934
    [TBL] [Abstract][Full Text] [Related]  

  • 4. POWER: PhylOgenetic WEb Repeater--an integrated and user-optimized framework for biomolecular phylogenetic analysis.
    Lin CY; Lin FK; Lin CH; Lai LW; Hsu HJ; Chen SH; Hsiung CA
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W553-6. PubMed ID: 15980533
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments.
    Poirot O; O'Toole E; Notredame C
    Nucleic Acids Res; 2003 Jul; 31(13):3503-6. PubMed ID: 12824354
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Clustal W and Clustal X version 2.0.
    Larkin MA; Blackshields G; Brown NP; Chenna R; McGettigan PA; McWilliam H; Valentin F; Wallace IM; Wilm A; Lopez R; Thompson JD; Gibson TJ; Higgins DG
    Bioinformatics; 2007 Nov; 23(21):2947-8. PubMed ID: 17846036
    [TBL] [Abstract][Full Text] [Related]  

  • 7. jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences.
    Jeon YS; Chung H; Park S; Hur I; Lee JH; Chun J
    Bioinformatics; 2005 Jul; 21(14):3171-3. PubMed ID: 15855247
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The Clustal Omega Multiple Alignment Package.
    Sievers F; Higgins DG
    Methods Mol Biol; 2021; 2231():3-16. PubMed ID: 33289883
    [TBL] [Abstract][Full Text] [Related]  

  • 9. R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server.
    Cannone JJ; Sweeney BA; Petrov AI; Gutell RR; Zirbel CL; Leontis N
    Nucleic Acids Res; 2015 Jul; 43(W1):W15-23. PubMed ID: 26048960
    [TBL] [Abstract][Full Text] [Related]  

  • 10. FASconCAT: Convenient handling of data matrices.
    Kück P; Meusemann K
    Mol Phylogenet Evol; 2010 Sep; 56(3):1115-8. PubMed ID: 20416383
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ClustalW-MPI: ClustalW analysis using distributed and parallel computing.
    Li KB
    Bioinformatics; 2003 Aug; 19(12):1585-6. PubMed ID: 12912844
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CorreLogo: an online server for 3D sequence logos of RNA and DNA alignments.
    Bindewald E; Schneider TD; Shapiro BA
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W405-11. PubMed ID: 16845037
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Clustalnet: the joining of Clustal and CORBA.
    Campagne F
    Bioinformatics; 2000 Jul; 16(7):606-12. PubMed ID: 11038330
    [TBL] [Abstract][Full Text] [Related]  

  • 14. PROMALS web server for accurate multiple protein sequence alignments.
    Pei J; Kim BH; Tang M; Grishin NV
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction.
    Hagopian R; Davidson JR; Datta RS; Samad B; Jarvis GR; Sjölander K
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W29-34. PubMed ID: 20430824
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ESPript: analysis of multiple sequence alignments in PostScript.
    Gouet P; Courcelle E; Stuart DI; Métoz F
    Bioinformatics; 1999 Apr; 15(4):305-8. PubMed ID: 10320398
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Seq-SNPing: multiple-alignment tool for SNP discovery, SNP ID identification, and RFLP genotyping.
    Chang HW; Chuang LY; Cheng YH; Ho CH; Wen CH; Yang CH
    OMICS; 2009 Jun; 13(3):253-60. PubMed ID: 19514837
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MAVID multiple alignment server.
    Bray N; Pachter L
    Nucleic Acids Res; 2003 Jul; 31(13):3525-6. PubMed ID: 12824358
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SNUFER: A software for localization and presentation of single nucleotide polymorphisms using a Clustal multiple sequence alignment output file.
    Mansur MA; Cardozo GP; Santos EV; Marins M
    Bioinformation; 2008; 3(2):63-4. PubMed ID: 19238196
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences.
    Chikkagoudar S; Livesay DR; Roshan U
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W59-63. PubMed ID: 20522510
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.