272 related articles for article (PubMed ID: 12824391)
1. mreps: Efficient and flexible detection of tandem repeats in DNA.
Kolpakov R; Bana G; Kucherov G
Nucleic Acids Res; 2003 Jul; 31(13):3672-8. PubMed ID: 12824391
[TBL] [Abstract][Full Text] [Related]
2. BWtrs: A tool for searching for tandem repeats in DNA sequences based on the Burrows-Wheeler transform.
Pokrzywa R; Polanski A
Genomics; 2010 Nov; 96(5):316-21. PubMed ID: 20709168
[TBL] [Abstract][Full Text] [Related]
3. Identification of polymorphic tandem repeats by direct comparison of genome sequence from different bacterial strains: a web-based resource.
Denoeud F; Vergnaud G
BMC Bioinformatics; 2004 Jan; 5():4. PubMed ID: 14715089
[TBL] [Abstract][Full Text] [Related]
4. Tandem repeats over the edit distance.
Sokol D; Benson G; Tojeira J
Bioinformatics; 2007 Jan; 23(2):e30-5. PubMed ID: 17237101
[TBL] [Abstract][Full Text] [Related]
5. TRAP: automated classification, quantification and annotation of tandemly repeated sequences.
Sobreira TJ; Durham AM; Gruber A
Bioinformatics; 2006 Feb; 22(3):361-2. PubMed ID: 16332714
[TBL] [Abstract][Full Text] [Related]
6. Direct mapping of symbolic DNA sequence into frequency domain in global repeat map algorithm.
Glunčić M; Paar V
Nucleic Acids Res; 2013 Jan; 41(1):e17. PubMed ID: 22977183
[TBL] [Abstract][Full Text] [Related]
7. Tools for the identification of variable and potentially variable tandem repeats.
O'Dushlaine CT; Shields DC
BMC Genomics; 2006 Nov; 7():290. PubMed ID: 17107618
[TBL] [Abstract][Full Text] [Related]
8. Beyond tandem repeats: complex pattern structures and distant regions of similarity.
Hauth AM; Joseph DA
Bioinformatics; 2002; 18 Suppl 1():S31-7. PubMed ID: 12169528
[TBL] [Abstract][Full Text] [Related]
9. YASS: enhancing the sensitivity of DNA similarity search.
Noé L; Kucherov G
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W540-3. PubMed ID: 15980530
[TBL] [Abstract][Full Text] [Related]
10. Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.
Mrázek J; Xie S
Bioinformatics; 2006 Dec; 22(24):3099-100. PubMed ID: 17095514
[TBL] [Abstract][Full Text] [Related]
11. SBARS: fast creation of dotplots for DNA sequences on different scales using GA-,GC-content.
Pyatkov MI; Pankratov AN
Bioinformatics; 2014 Jun; 30(12):1765-6. PubMed ID: 24532721
[TBL] [Abstract][Full Text] [Related]
12. Repseek, a tool to retrieve approximate repeats from large DNA sequences.
Achaz G; Boyer F; Rocha EP; Viari A; Coissac E
Bioinformatics; 2007 Jan; 23(1):119-21. PubMed ID: 17038345
[TBL] [Abstract][Full Text] [Related]
13. PRAP: an ab initio software package for automated genome-wide analysis of DNA repeats for prokaryotes.
Chen GL; Chang YJ; Hsueh CH
Bioinformatics; 2013 Nov; 29(21):2683-9. PubMed ID: 23958725
[TBL] [Abstract][Full Text] [Related]
14. HomologMiner: looking for homologous genomic groups in whole genomes.
Hou M; Berman P; Hsu CH; Harris RS
Bioinformatics; 2007 Apr; 23(8):917-25. PubMed ID: 17308341
[TBL] [Abstract][Full Text] [Related]
15. Application of the Burrows-Wheeler Transform for searching for tandem repeats in DNA sequences.
Pokrzywa R
Int J Bioinform Res Appl; 2009; 5(4):432-46. PubMed ID: 19640830
[TBL] [Abstract][Full Text] [Related]
16. MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.
Cruveiller S; Le Saux J; Vallenet D; Lajus A; Bocs S; Médigue C
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W471-9. PubMed ID: 15980515
[TBL] [Abstract][Full Text] [Related]
17. Improved hit criteria for DNA local alignment.
Noé L; Kucherov G
BMC Bioinformatics; 2004 Oct; 5():149. PubMed ID: 15485572
[TBL] [Abstract][Full Text] [Related]
18. STRING: finding tandem repeats in DNA sequences.
Parisi V; De Fonzo V; Aluffi-Pentini F
Bioinformatics; 2003 Sep; 19(14):1733-8. PubMed ID: 14512342
[TBL] [Abstract][Full Text] [Related]
19. TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences.
Teeling H; Waldmann J; Lombardot T; Bauer M; Glöckner FO
BMC Bioinformatics; 2004 Oct; 5():163. PubMed ID: 15507136
[TBL] [Abstract][Full Text] [Related]
20. Neisseria Base: a comparative genomics database for Neisseria meningitidis.
Katz LS; Humphrey JC; Conley AB; Nelakuditi V; Kislyuk AO; Agrawal S; Jayaraman P; Harcourt BH; Olsen-Rasmussen MA; Frace M; Sharma NV; Mayer LW; Jordan IK
Database (Oxford); 2011; 2011():bar035. PubMed ID: 21930505
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]