These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

147 related articles for article (PubMed ID: 12824423)

  • 1. ORFeus: Detection of distant homology using sequence profiles and predicted secondary structure.
    Ginalski K; Pas J; Wyrwicz LS; von Grotthuss M; Bujnicki JM; Rychlewski L
    Nucleic Acids Res; 2003 Jul; 31(13):3804-7. PubMed ID: 12824423
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Detecting distant homology with Meta-BASIC.
    Ginalski K; von Grotthuss M; Grishin NV; Rychlewski L
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W576-81. PubMed ID: 15215454
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments.
    Zhou H; Zhou Y
    Proteins; 2005 Feb; 58(2):321-8. PubMed ID: 15523666
    [TBL] [Abstract][Full Text] [Related]  

  • 4. BioShell Threader: protein homology detection based on sequence profiles and secondary structure profiles.
    Gront D; Blaszczyk M; Wojciechowski P; Kolinski A
    Nucleic Acids Res; 2012 Jul; 40(Web Server issue):W257-62. PubMed ID: 22693216
    [TBL] [Abstract][Full Text] [Related]  

  • 5. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.
    Zhou H; Zhou Y
    Bioinformatics; 2005 Sep; 21(18):3615-21. PubMed ID: 16020471
    [TBL] [Abstract][Full Text] [Related]  

  • 6. NdPASA: a pairwise sequence alignment server for distantly related proteins.
    Li W; Wang J; Feng JA
    Bioinformatics; 2005 Oct; 21(19):3803-5. PubMed ID: 16105904
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Optimization of profile-to-profile alignment parameters for one-dimensional threading.
    Gniewek P; Kolinski A; Gront D
    J Comput Biol; 2012 Jul; 19(7):879-86. PubMed ID: 22731622
    [TBL] [Abstract][Full Text] [Related]  

  • 8. COMPASS server for remote homology inference.
    Sadreyev RI; Tang M; Kim BH; Grishin NV
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W653-8. PubMed ID: 17517780
    [TBL] [Abstract][Full Text] [Related]  

  • 9. LOMETS: a local meta-threading-server for protein structure prediction.
    Wu S; Zhang Y
    Nucleic Acids Res; 2007; 35(10):3375-82. PubMed ID: 17478507
    [TBL] [Abstract][Full Text] [Related]  

  • 10. PROMALS web server for accurate multiple protein sequence alignments.
    Pei J; Kim BH; Tang M; Grishin NV
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Structure prediction meta server.
    Bujnicki JM; Elofsson A; Fischer D; Rychlewski L
    Bioinformatics; 2001 Aug; 17(8):750-1. PubMed ID: 11524381
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
    Pei J; Grishin NV
    Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Multiple sequence threading: an analysis of alignment quality and stability.
    Taylor WR
    J Mol Biol; 1997 Jun; 269(5):902-43. PubMed ID: 9223650
    [TBL] [Abstract][Full Text] [Related]  

  • 14. DOMAC: an accurate, hybrid protein domain prediction server.
    Cheng J
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W354-6. PubMed ID: 17553833
    [TBL] [Abstract][Full Text] [Related]  

  • 15. JPred: a consensus secondary structure prediction server.
    Cuff JA; Clamp ME; Siddiqui AS; Finlay M; Barton GJ
    Bioinformatics; 1998; 14(10):892-3. PubMed ID: 9927721
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
    Yona G; Levitt M
    J Mol Biol; 2002 Feb; 315(5):1257-75. PubMed ID: 11827492
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles.
    Gewehr JE; Zimmer R
    Bioinformatics; 2006 Jan; 22(2):181-7. PubMed ID: 16267083
    [TBL] [Abstract][Full Text] [Related]  

  • 18. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
    Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
    BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.
    Melvin I; Ie E; Kuang R; Weston J; Stafford WN; Leslie C
    BMC Bioinformatics; 2007 May; 8 Suppl 4(Suppl 4):S2. PubMed ID: 17570145
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.