These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

205 related articles for article (PubMed ID: 12829464)

  • 1. Posttransition state desolvation of the hydrophobic core of the src-SH3 protein domain.
    Guo W; Lampoudi S; Shea JE
    Biophys J; 2003 Jul; 85(1):61-9. PubMed ID: 12829464
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Temperature dependence of the free energy landscape of the src-SH3 protein domain.
    Guo W; Lampoudi S; Shea JE
    Proteins; 2004 May; 55(2):395-406. PubMed ID: 15048830
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Probing the folding free energy landscape of the Src-SH3 protein domain.
    Shea JE; Onuchic JN; Brooks CL
    Proc Natl Acad Sci U S A; 2002 Dec; 99(25):16064-8. PubMed ID: 12446834
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Experiment and theory highlight role of native state topology in SH3 folding.
    Riddle DS; Grantcharova VP; Santiago JV; Alm E; Ruczinski I; Baker D
    Nat Struct Biol; 1999 Nov; 6(11):1016-24. PubMed ID: 10542092
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Formation of the folding nucleus of an SH3 domain investigated by loosely coupled molecular dynamics simulations.
    Settanni G; Gsponer J; Caflisch A
    Biophys J; 2004 Mar; 86(3):1691-701. PubMed ID: 14990497
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reconstruction of the src-SH3 protein domain transition state ensemble using multiscale molecular dynamics simulations.
    Ding F; Guo W; Dokholyan NV; Shakhnovich EI; Shea JE
    J Mol Biol; 2005 Jul; 350(5):1035-50. PubMed ID: 15982666
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Folding dynamics of the src SH3 domain.
    Grantcharova VP; Baker D
    Biochemistry; 1997 Dec; 36(50):15685-92. PubMed ID: 9398297
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse.
    Cheung MS; García AE; Onuchic JN
    Proc Natl Acad Sci U S A; 2002 Jan; 99(2):685-90. PubMed ID: 11805324
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Molecular dynamics simulations from putative transition states of alpha-spectrin SH3 domain.
    Periole X; Vendruscolo M; Mark AE
    Proteins; 2007 Nov; 69(3):536-50. PubMed ID: 17623848
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Towards a complete description of the structural and dynamic properties of the denatured state of barnase and the role of residual structure in folding.
    Wong KB; Clarke J; Bond CJ; Neira JL; Freund SM; Fersht AR; Daggett V
    J Mol Biol; 2000 Mar; 296(5):1257-82. PubMed ID: 10698632
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Transition state of a SH3 domain detected with principle component analysis and a charge-neutralized all-atom protein model.
    Mitomo D; Nakamura HK; Ikeda K; Yamagishi A; Higo J
    Proteins; 2006 Sep; 64(4):883-94. PubMed ID: 16807919
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Direct molecular dynamics observation of protein folding transition state ensemble.
    Ding F; Dokholyan NV; Buldyrev SV; Stanley HE; Shakhnovich EI
    Biophys J; 2002 Dec; 83(6):3525-32. PubMed ID: 12496119
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Hydrophobic core packing in the SH3 domain folding transition state.
    Northey JG; Di Nardo AA; Davidson AR
    Nat Struct Biol; 2002 Feb; 9(2):126-30. PubMed ID: 11786916
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The structure of the major transition state for folding of an FF domain from experiment and simulation.
    Jemth P; Day R; Gianni S; Khan F; Allen M; Daggett V; Fersht AR
    J Mol Biol; 2005 Jul; 350(2):363-78. PubMed ID: 15935381
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Differential stabilization of two hydrophobic cores in the transition state of the villin 14T folding reaction.
    Choe SE; Li L; Matsudaira PT; Wagner G; Shakhnovich EI
    J Mol Biol; 2000 Nov; 304(1):99-115. PubMed ID: 11071813
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The role of backbone motions in ligand binding to the c-Src SH3 domain.
    Wang C; Pawley NH; Nicholson LK
    J Mol Biol; 2001 Nov; 313(4):873-87. PubMed ID: 11697910
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Electrostatic effects in the folding of the SH3 domain of the c-Src tyrosine kinase: pH-dependence in 3D-domain swapping and amyloid formation.
    Bacarizo J; Martinez-Rodriguez S; Martin-Garcia JM; Andujar-Sanchez M; Ortiz-Salmeron E; Neira JL; Camara-Artigas A
    PLoS One; 2014; 9(12):e113224. PubMed ID: 25490095
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A thermodynamic and kinetic analysis of the folding pathway of an SH3 domain entropically stabilised by a redesigned hydrophobic core.
    Cobos ES; Filimonov VV; Vega MC; Mateo PL; Serrano L; Martínez JC
    J Mol Biol; 2003 Apr; 328(1):221-33. PubMed ID: 12684010
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Molecular dynamics simulations of protein unfolding and limited refolding: characterization of partially unfolded states of ubiquitin in 60% methanol and in water.
    Alonso DO; Daggett V
    J Mol Biol; 1995 Mar; 247(3):501-20. PubMed ID: 7714903
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Folding of a highly conserved diverging turn motif from the SH3 domain.
    Gnanakaran S; Garcia AE
    Biophys J; 2003 Mar; 84(3):1548-62. PubMed ID: 12609860
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.