227 related articles for article (PubMed ID: 12855439)
1. Stochastic modeling of RNA pseudoknotted structures: a grammatical approach.
Cai L; Malmberg RL; Wu Y
Bioinformatics; 2003; 19 Suppl 1():i66-73. PubMed ID: 12855439
[TBL] [Abstract][Full Text] [Related]
2. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
[TBL] [Abstract][Full Text] [Related]
3. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Bioinformatics; 2005 Jun; 21(11):2611-7. PubMed ID: 15784748
[TBL] [Abstract][Full Text] [Related]
4. Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots.
Song Y; Liu C; Malmberg RL; He C; Cai L
Int J Bioinform Res Appl; 2006; 2(3):289-304. PubMed ID: 18048167
[TBL] [Abstract][Full Text] [Related]
5. CONTRAfold: RNA secondary structure prediction without physics-based models.
Do CB; Woods DA; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
[TBL] [Abstract][Full Text] [Related]
6. The language of RNA: a formal grammar that includes pseudoknots.
Rivas E; Eddy SR
Bioinformatics; 2000 Apr; 16(4):334-40. PubMed ID: 10869031
[TBL] [Abstract][Full Text] [Related]
7. A grammar based methodology for structural motif finding in ncRNA database search.
Quest D; Tapprich W; Ali H
Comput Syst Bioinformatics Conf; 2007; 6():215-25. PubMed ID: 17951826
[TBL] [Abstract][Full Text] [Related]
8. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
Ruan J; Stormo GD; Zhang W
Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
[TBL] [Abstract][Full Text] [Related]
9. Pair hidden Markov models on tree structures.
Sakakibara Y
Bioinformatics; 2003; 19 Suppl 1():i232-40. PubMed ID: 12855464
[TBL] [Abstract][Full Text] [Related]
10. Computational analysis of RNAs.
Eddy SR
Cold Spring Harb Symp Quant Biol; 2006; 71():117-28. PubMed ID: 17381287
[TBL] [Abstract][Full Text] [Related]
11. Evaluation of a sophisticated SCFG design for RNA secondary structure prediction.
Nebel ME; Scheid A
Theory Biosci; 2011 Dec; 130(4):313-36. PubMed ID: 22135038
[TBL] [Abstract][Full Text] [Related]
12. Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.
Dowell RD; Eddy SR
BMC Bioinformatics; 2004 Jun; 5():71. PubMed ID: 15180907
[TBL] [Abstract][Full Text] [Related]
13. Accelerated probabilistic inference of RNA structure evolution.
Holmes I
BMC Bioinformatics; 2005 Mar; 6():73. PubMed ID: 15790387
[TBL] [Abstract][Full Text] [Related]
14. Multithreaded parsing for predicting RNA secondary structures.
Al-Mulhem MS
Int J Bioinform Res Appl; 2010; 6(6):609-21. PubMed ID: 21354966
[TBL] [Abstract][Full Text] [Related]
15. Pfold: RNA secondary structure prediction using stochastic context-free grammars.
Knudsen B; Hein J
Nucleic Acids Res; 2003 Jul; 31(13):3423-8. PubMed ID: 12824339
[TBL] [Abstract][Full Text] [Related]
16. Novel and efficient RNA secondary structure prediction using hierarchical folding.
Jabbari H; Condon A; Zhao S
J Comput Biol; 2008 Mar; 15(2):139-63. PubMed ID: 18312147
[TBL] [Abstract][Full Text] [Related]
17. RNA pseudoknot modeling using intersections of stochastic context free grammars with applications to database search.
Brown M; Wilson C
Pac Symp Biocomput; 1996; ():109-25. PubMed ID: 9390227
[TBL] [Abstract][Full Text] [Related]
18. A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures.
Jabbari H; Condon A
BMC Bioinformatics; 2014 May; 15():147. PubMed ID: 24884954
[TBL] [Abstract][Full Text] [Related]
19. Automated alignment of RNA sequences to pseudoknotted structures.
Tabaska JE; Stormo GD
Proc Int Conf Intell Syst Mol Biol; 1997; 5():311-8. PubMed ID: 9322055
[TBL] [Abstract][Full Text] [Related]
20. SCFGs in RNA secondary structure prediction RNA secondary structure prediction: a hands-on approach.
Sükösd Z; Andersen ES; Lyngsø R
Methods Mol Biol; 2014; 1097():143-62. PubMed ID: 24639159
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]