These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

169 related articles for article (PubMed ID: 12855453)

  • 1. Identification of functional clusters of transcription factor binding motifs in genome sequences: the MSCAN algorithm.
    Johansson O; Alkema W; Wasserman WW; Lagergren J
    Bioinformatics; 2003; 19 Suppl 1():i169-76. PubMed ID: 12855453
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CREME: a framework for identifying cis-regulatory modules in human-mouse conserved segments.
    Sharan R; Ovcharenko I; Ben-Hur A; Karp RM
    Bioinformatics; 2003; 19 Suppl 1():i283-91. PubMed ID: 12855471
    [TBL] [Abstract][Full Text] [Related]  

  • 3. MSCAN: identification of functional clusters of transcription factor binding sites.
    Alkema WB; Johansson O; Lagergren J; Wasserman WW
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W195-8. PubMed ID: 15215379
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A probabilistic method to detect regulatory modules.
    Sinha S; van Nimwegen E; Siggia ED
    Bioinformatics; 2003; 19 Suppl 1():i292-301. PubMed ID: 12855472
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Condition-specific coregulation with cis-regulatory motifs and modules in the mouse genome.
    Choi D; Fang Y; Mathers WD
    Genomics; 2006 Apr; 87(4):500-8. PubMed ID: 16431075
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Context specific transcription factor prediction.
    Yang E; Simcha D; Almon RR; Dubois DC; Jusko WJ; Androulakis IP
    Ann Biomed Eng; 2007 Jun; 35(6):1053-67. PubMed ID: 17377845
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Genome-wide discovery of transcriptional modules from DNA sequence and gene expression.
    Segal E; Yelensky R; Koller D
    Bioinformatics; 2003; 19 Suppl 1():i273-82. PubMed ID: 12855470
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Prediction of similarly acting cis-regulatory modules by subsequence profiling and comparative genomics in Drosophila melanogaster and D.pseudoobscura.
    Grad YH; Roth FP; Halfon MS; Church GM
    Bioinformatics; 2004 Nov; 20(16):2738-50. PubMed ID: 15145800
    [TBL] [Abstract][Full Text] [Related]  

  • 9. WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
    Pavesi G; Zambelli F; Pesole G
    BMC Bioinformatics; 2007 Feb; 8():46. PubMed ID: 17286865
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.
    Berezikov E; Guryev V; Plasterk RH; Cuppen E
    Genome Res; 2004 Jan; 14(1):170-8. PubMed ID: 14672977
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Simultaneous alignment and annotation of cis-regulatory regions.
    Bais AS; Grossmann S; Vingron M
    Bioinformatics; 2007 Jan; 23(2):e44-9. PubMed ID: 17237103
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.
    Pierstorff N; Bergman CM; Wiehe T
    Bioinformatics; 2006 Dec; 22(23):2858-64. PubMed ID: 17032682
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Combining phylogenetic data with co-regulated genes to identify regulatory motifs.
    Wang T; Stormo GD
    Bioinformatics; 2003 Dec; 19(18):2369-80. PubMed ID: 14668220
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Meta-analysis discovery of tissue-specific DNA sequence motifs from mammalian gene expression data.
    Huber BR; Bulyk ML
    BMC Bioinformatics; 2006 Apr; 7():229. PubMed ID: 16643658
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Computational methods for the detection of cis-regulatory modules.
    Van Loo P; Marynen P
    Brief Bioinform; 2009 Sep; 10(5):509-24. PubMed ID: 19498042
    [TBL] [Abstract][Full Text] [Related]  

  • 16. TFBScluster: a resource for the characterization of transcriptional regulatory networks.
    Donaldson IJ; Chapman M; Göttgens B
    Bioinformatics; 2005 Jul; 21(13):3058-9. PubMed ID: 15855248
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Regulatory motif discovery using a population clustering evolutionary algorithm.
    Lones M; Tyrrell A
    IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(3):403-414. PubMed ID: 17666760
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Combining sequence and time series expression data to learn transcriptional modules.
    Kundaje A; Middendorf M; Gao F; Wiggins C; Leslie C
    IEEE/ACM Trans Comput Biol Bioinform; 2005; 2(3):194-202. PubMed ID: 17044183
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Comparing expression profiles of genes with similar promoter regions.
    Park PJ; Butte AJ; Kohane IS
    Bioinformatics; 2002 Dec; 18(12):1576-84. PubMed ID: 12490441
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Finding motifs in the twilight zone.
    Keich U; Pevzner PA
    Bioinformatics; 2002 Oct; 18(10):1374-81. PubMed ID: 12376382
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.