211 related articles for article (PubMed ID: 12855461)
1. APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.
O'Sullivan O; Zehnder M; Higgins D; Bucher P; Grosdidier A; Notredame C
Bioinformatics; 2003; 19 Suppl 1():i215-21. PubMed ID: 12855461
[TBL] [Abstract][Full Text] [Related]
2. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
[TBL] [Abstract][Full Text] [Related]
3. Protein multiple sequence alignment benchmarking through secondary structure prediction.
Le Q; Sievers F; Higgins DG
Bioinformatics; 2017 May; 33(9):1331-1337. PubMed ID: 28093407
[TBL] [Abstract][Full Text] [Related]
4. APDB: a web server to evaluate the accuracy of sequence alignments using structural information.
Armougom F; Poirot O; Moretti S; Higgins DG; Bucher P; Keduas V; Notredame C
Bioinformatics; 2006 Oct; 22(19):2439-40. PubMed ID: 17032685
[TBL] [Abstract][Full Text] [Related]
5. The iRMSD: a local measure of sequence alignment accuracy using structural information.
Armougom F; Moretti S; Keduas V; Notredame C
Bioinformatics; 2006 Jul; 22(14):e35-9. PubMed ID: 16873492
[TBL] [Abstract][Full Text] [Related]
6. Accuracy of structure-based sequence alignment of automatic methods.
Kim C; Lee B
BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
[TBL] [Abstract][Full Text] [Related]
7. Revisiting Evaluation of Multiple Sequence Alignment Methods.
Warnow T
Methods Mol Biol; 2021; 2231():299-317. PubMed ID: 33289899
[TBL] [Abstract][Full Text] [Related]
8. Refining multiple sequence alignments with conserved core regions.
Chakrabarti S; Lanczycki CJ; Panchenko AR; Przytycka TM; Thiessen PA; Bryant SH
Nucleic Acids Res; 2006; 34(9):2598-606. PubMed ID: 16707662
[TBL] [Abstract][Full Text] [Related]
9. SABmark--a benchmark for sequence alignment that covers the entire known fold space.
Van Walle I; Lasters I; Wyns L
Bioinformatics; 2005 Apr; 21(7):1267-8. PubMed ID: 15333456
[TBL] [Abstract][Full Text] [Related]
10. Iterative non-sequential protein structural alignment.
Salem S; Zaki MJ
Comput Syst Bioinformatics Conf; 2008; 7():183-94. PubMed ID: 19642279
[TBL] [Abstract][Full Text] [Related]
11. DNA reference alignment benchmarks based on tertiary structure of encoded proteins.
Carroll H; Beckstead W; O'Connor T; Ebbert M; Clement M; Snell Q; McClellan D
Bioinformatics; 2007 Oct; 23(19):2648-9. PubMed ID: 17686799
[TBL] [Abstract][Full Text] [Related]
12. Benchmarking tools for the alignment of functional noncoding DNA.
Pollard DA; Bergman CM; Stoye J; Celniker SE; Eisen MB
BMC Bioinformatics; 2004 Jan; 5():6. PubMed ID: 14736341
[TBL] [Abstract][Full Text] [Related]
13. COACH: profile-profile alignment of protein families using hidden Markov models.
Edgar RC; Sjölander K
Bioinformatics; 2004 May; 20(8):1309-18. PubMed ID: 14962937
[TBL] [Abstract][Full Text] [Related]
14. PROMALS web server for accurate multiple protein sequence alignments.
Pei J; Kim BH; Tang M; Grishin NV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345
[TBL] [Abstract][Full Text] [Related]
15. Quality measures for protein alignment benchmarks.
Edgar RC
Nucleic Acids Res; 2010 Apr; 38(7):2145-53. PubMed ID: 20047958
[TBL] [Abstract][Full Text] [Related]
16. Consensus alignment for reliable framework prediction in homology modeling.
Prasad JC; Comeau SR; Vajda S; Camacho CJ
Bioinformatics; 2003 Sep; 19(13):1682-91. PubMed ID: 12967965
[TBL] [Abstract][Full Text] [Related]
17. Improvement of alignment accuracy utilizing sequentially conserved motifs.
Chakrabarti S; Bhardwaj N; Anand PA; Sowdhamini R
BMC Bioinformatics; 2004 Oct; 5():167. PubMed ID: 15509307
[TBL] [Abstract][Full Text] [Related]
18. A comparison of scoring functions for protein sequence profile alignment.
Edgar RC; Sjölander K
Bioinformatics; 2004 May; 20(8):1301-8. PubMed ID: 14962936
[TBL] [Abstract][Full Text] [Related]
19. PROMALS: towards accurate multiple sequence alignments of distantly related proteins.
Pei J; Grishin NV
Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437
[TBL] [Abstract][Full Text] [Related]
20. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
Thompson JD; Koehl P; Ripp R; Poch O
Proteins; 2005 Oct; 61(1):127-36. PubMed ID: 16044462
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
