95 related articles for article (PubMed ID: 12867747)
1. PseudoCyc, a pathway-genome database for Pseudomonas aeruginosa.
Romero P; Karp P
J Mol Microbiol Biotechnol; 2003; 5(4):230-9. PubMed ID: 12867747
[TBL] [Abstract][Full Text] [Related]
2. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R; Altman T; Dale JM; Dreher K; Fulcher CA; Gilham F; Kaipa P; Karthikeyan AS; Kothari A; Krummenacker M; Latendresse M; Mueller LA; Paley S; Popescu L; Pujar A; Shearer AG; Zhang P; Karp PD
Nucleic Acids Res; 2010 Jan; 38(Database issue):D473-9. PubMed ID: 19850718
[TBL] [Abstract][Full Text] [Related]
3. Using functional and organizational information to improve genome-wide computational prediction of transcription units on pathway-genome databases.
Romero PR; Karp PD
Bioinformatics; 2004 Mar; 20(5):709-17. PubMed ID: 14751985
[TBL] [Abstract][Full Text] [Related]
4. The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Caspi R; Foerster H; Fulcher CA; Kaipa P; Krummenacker M; Latendresse M; Paley S; Rhee SY; Shearer AG; Tissier C; Walk TC; Zhang P; Karp PD
Nucleic Acids Res; 2008 Jan; 36(Database issue):D623-31. PubMed ID: 17965431
[TBL] [Abstract][Full Text] [Related]
5. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R; Altman T; Dreher K; Fulcher CA; Subhraveti P; Keseler IM; Kothari A; Krummenacker M; Latendresse M; Mueller LA; Ong Q; Paley S; Pujar A; Shearer AG; Travers M; Weerasinghe D; Zhang P; Karp PD
Nucleic Acids Res; 2012 Jan; 40(Database issue):D742-53. PubMed ID: 22102576
[TBL] [Abstract][Full Text] [Related]
6. Pseudomonas aeruginosa Genome Database and PseudoCAP: facilitating community-based, continually updated, genome annotation.
Winsor GL; Lo R; Ho Sui SJ; Ung KS; Huang S; Cheng D; Ching WK; Hancock RE; Brinkman FS
Nucleic Acids Res; 2005 Jan; 33(Database issue):D338-43. PubMed ID: 15608211
[TBL] [Abstract][Full Text] [Related]
7. Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.
Karp PD; Ouzounis CA; Moore-Kochlacs C; Goldovsky L; Kaipa P; Ahrén D; Tsoka S; Darzentas N; Kunin V; López-Bigas N
Nucleic Acids Res; 2005; 33(19):6083-9. PubMed ID: 16246909
[TBL] [Abstract][Full Text] [Related]
8. The Pathway Tools software.
Karp PD; Paley S; Romero P
Bioinformatics; 2002; 18 Suppl 1():S225-32. PubMed ID: 12169551
[TBL] [Abstract][Full Text] [Related]
9. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases.
Caspi R; Billington R; Ferrer L; Foerster H; Fulcher CA; Keseler IM; Kothari A; Krummenacker M; Latendresse M; Mueller LA; Ong Q; Paley S; Subhraveti P; Weaver DS; Karp PD
Nucleic Acids Res; 2016 Jan; 44(D1):D471-80. PubMed ID: 26527732
[TBL] [Abstract][Full Text] [Related]
10. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes.
Winsor GL; Van Rossum T; Lo R; Khaira B; Whiteside MD; Hancock RE; Brinkman FS
Nucleic Acids Res; 2009 Jan; 37(Database issue):D483-8. PubMed ID: 18978025
[TBL] [Abstract][Full Text] [Related]
11. The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases.
Caspi R; Altman T; Billington R; Dreher K; Foerster H; Fulcher CA; Holland TA; Keseler IM; Kothari A; Kubo A; Krummenacker M; Latendresse M; Mueller LA; Ong Q; Paley S; Subhraveti P; Weaver DS; Weerasinghe D; Zhang P; Karp PD
Nucleic Acids Res; 2014 Jan; 42(Database issue):D459-71. PubMed ID: 24225315
[TBL] [Abstract][Full Text] [Related]
12. Targeting multiple targets in Pseudomonas aeruginosa PAO1 using flux balance analysis of a reconstructed genome-scale metabolic network.
Perumal D; Samal A; Sakharkar KR; Sakharkar MK
J Drug Target; 2011 Jan; 19(1):1-13. PubMed ID: 20233082
[TBL] [Abstract][Full Text] [Related]
13. CycADS: an annotation database system to ease the development and update of BioCyc databases.
Vellozo AF; Véron AS; Baa-Puyoulet P; Huerta-Cepas J; Cottret L; Febvay G; Calevro F; Rahbé Y; Douglas AE; Gabaldón T; Sagot MF; Charles H; Colella S
Database (Oxford); 2011; 2011():bar008. PubMed ID: 21474551
[TBL] [Abstract][Full Text] [Related]
14. Genetic control of the beta-ketoadipate pathway in Pseudomonas aeruginosa.
Kemp MB; Hegeman GD
J Bacteriol; 1968 Nov; 96(5):1488-99. PubMed ID: 4973125
[TBL] [Abstract][Full Text] [Related]
15. Genome-scale metabolic network analysis of the opportunistic pathogen Pseudomonas aeruginosa PAO1.
Oberhardt MA; Puchałka J; Fryer KE; Martins dos Santos VA; Papin JA
J Bacteriol; 2008 Apr; 190(8):2790-803. PubMed ID: 18192387
[TBL] [Abstract][Full Text] [Related]
16. A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases.
Green ML; Karp PD
BMC Bioinformatics; 2004 Jun; 5():76. PubMed ID: 15189570
[TBL] [Abstract][Full Text] [Related]
17. Prediction of missing enzyme genes in a bacterial metabolic network. Reconstruction of the lysine-degradation pathway of Pseudomonas aeruginosa.
Yamanishi Y; Mihara H; Osaki M; Muramatsu H; Esaki N; Sato T; Hizukuri Y; Goto S; Kanehisa M
FEBS J; 2007 May; 274(9):2262-73. PubMed ID: 17388807
[TBL] [Abstract][Full Text] [Related]
18. An interactive web-based Pseudomonas aeruginosa genome database: discovery of new genes, pathways and structures.
Croft L; Beatson SA; Whitchurch CB; Huang B; Blakeley RL; Mattick JS
Microbiology (Reading); 2000 Oct; 146 ( Pt 10)():2351-2364. PubMed ID: 11021912
[TBL] [Abstract][Full Text] [Related]
19. MetaCyc: a multiorganism database of metabolic pathways and enzymes.
Caspi R; Foerster H; Fulcher CA; Hopkinson R; Ingraham J; Kaipa P; Krummenacker M; Paley S; Pick J; Rhee SY; Tissier C; Zhang P; Karp PD
Nucleic Acids Res; 2006 Jan; 34(Database issue):D511-6. PubMed ID: 16381923
[TBL] [Abstract][Full Text] [Related]
20. Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study.
Naithani S; Jaiswal P
Methods Mol Biol; 2017; 1533():241-256. PubMed ID: 27987175
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]