These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

206 related articles for article (PubMed ID: 12888524)

  • 21. Family relationships: should consensus reign?--consensus clustering for protein families.
    Nikolski M; Sherman DJ
    Bioinformatics; 2007 Jan; 23(2):e71-6. PubMed ID: 17237108
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.
    Das S; Lee D; Sillitoe I; Dawson NL; Lees JG; Orengo CA
    Bioinformatics; 2015 Nov; 31(21):3460-7. PubMed ID: 26139634
    [TBL] [Abstract][Full Text] [Related]  

  • 23. PHOG-BLAST--a new generation tool for fast similarity search of protein families.
    Merkeev IV; Mironov AA
    BMC Evol Biol; 2006 Jun; 6():51. PubMed ID: 16792802
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Supervised protein family classification and new family construction.
    Yi G; Thon MR; Sze SH
    J Comput Biol; 2012 Aug; 19(8):957-67. PubMed ID: 22876787
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Target space for structural genomics revisited.
    Liu J; Rost B
    Bioinformatics; 2002 Jul; 18(7):922-33. PubMed ID: 12117789
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Protein family alignment annotation.
    Gilbert D
    Brief Bioinform; 2003 Jun; 4(2):192-6. PubMed ID: 12846399
    [TBL] [Abstract][Full Text] [Related]  

  • 27. The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
    Pearl F; Todd A; Sillitoe I; Dibley M; Redfern O; Lewis T; Bennett C; Marsden R; Grant A; Lee D; Akpor A; Maibaum M; Harrison A; Dallman T; Reeves G; Diboun I; Addou S; Lise S; Johnston C; Sillero A; Thornton J; Orengo C
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D247-51. PubMed ID: 15608188
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Identification of subfamily-specific sites based on active sites modeling and clustering.
    de Melo-Minardi RC; Bastard K; Artiguenave F
    Bioinformatics; 2010 Dec; 26(24):3075-82. PubMed ID: 20980272
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Recent improvements of the ProDom database of protein domain families.
    Corpet F; Gouzy J; Kahn D
    Nucleic Acids Res; 1999 Jan; 27(1):263-7. PubMed ID: 9847197
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Blast sampling for structural and functional analyses.
    Friedrich A; Ripp R; Garnier N; Bettler E; Deléage G; Poch O; Moulinier L
    BMC Bioinformatics; 2007 Feb; 8():62. PubMed ID: 17319945
    [TBL] [Abstract][Full Text] [Related]  

  • 31. New approaches to phylogenetic tree search and their application to large numbers of protein alignments.
    Whelan S
    Syst Biol; 2007 Oct; 56(5):727-40. PubMed ID: 17849327
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment.
    Paten B; Herrero J; Beal K; Birney E
    Bioinformatics; 2009 Feb; 25(3):295-301. PubMed ID: 19056777
    [TBL] [Abstract][Full Text] [Related]  

  • 33. The accurate prediction of protein family from amino acid sequence by measuring features of sequence fragments.
    Hong H; Hong Q; Perkins R; Shi L; Fang H; Su Z; Dragan Y; Fuscoe JC; Tong W
    J Comput Biol; 2009 Dec; 16(12):1671-88. PubMed ID: 20047490
    [TBL] [Abstract][Full Text] [Related]  

  • 34. A map of the protein space--an automatic hierarchical classification of all protein sequences.
    Yona G; Linial N; Tishby N; Linial M
    Proc Int Conf Intell Syst Mol Biol; 1998; 6():212-21. PubMed ID: 9783227
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets.
    Albayrak A; Otu HH; Sezerman UO
    BMC Bioinformatics; 2010 Aug; 11():428. PubMed ID: 20718947
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Kalign--an accurate and fast multiple sequence alignment algorithm.
    Lassmann T; Sonnhammer EL
    BMC Bioinformatics; 2005 Dec; 6():298. PubMed ID: 16343337
    [TBL] [Abstract][Full Text] [Related]  

  • 37. SplitTester: software to identify domains responsible for functional divergence in protein family.
    Gao X; Vander Velden KA; Voytas DF; Gu X
    BMC Bioinformatics; 2005 Jun; 6():137. PubMed ID: 15929795
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Incremental generation of summarized clustering hierarchy for protein family analysis.
    Chen CY; Oyang YJ; Juan HF
    Bioinformatics; 2004 Nov; 20(16):2586-96. PubMed ID: 15130937
    [TBL] [Abstract][Full Text] [Related]  

  • 39. A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3.
    Dietmann S; Park J; Notredame C; Heger A; Lappe M; Holm L
    Nucleic Acids Res; 2001 Jan; 29(1):55-7. PubMed ID: 11125048
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Protein folds and families: sequence and structure alignments.
    Holm L; Sander C
    Nucleic Acids Res; 1999 Jan; 27(1):244-7. PubMed ID: 9847191
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.