110 related articles for article (PubMed ID: 12902383)
1. Estimating the repeat structure and length of DNA sequences using L-tuples.
Li X; Waterman MS
Genome Res; 2003 Aug; 13(8):1916-22. PubMed ID: 12902383
[TBL] [Abstract][Full Text] [Related]
2. Correcting base-assignment errors in repeat regions of shotgun assembly.
Zhi D; Keich U; Pevzner P; Heber S; Tang H
IEEE/ACM Trans Comput Biol Bioinform; 2007; 4(1):54-64. PubMed ID: 17277413
[TBL] [Abstract][Full Text] [Related]
3. De novo repeat classification and fragment assembly.
Pevzner PA; Tang H; Tesler G
Genome Res; 2004 Sep; 14(9):1786-96. PubMed ID: 15342561
[TBL] [Abstract][Full Text] [Related]
4. AMASS: a structured pattern matching approach to shotgun sequence assembly.
Kim S; Segre AM
J Comput Biol; 1999; 6(2):163-86. PubMed ID: 10421521
[TBL] [Abstract][Full Text] [Related]
5. BAC sequencing using pooled methods.
Saski CA; Feltus FA; Parida L; Haiminen N
Methods Mol Biol; 2015; 1227():55-67. PubMed ID: 25239741
[TBL] [Abstract][Full Text] [Related]
6. A clustering method for repeat analysis in DNA sequences.
Volfovsky N; Haas BJ; Salzberg SL
Genome Biol; 2001; 2(8):RESEARCH0027. PubMed ID: 11532211
[TBL] [Abstract][Full Text] [Related]
7. ReRep: computational detection of repetitive sequences in genome survey sequences (GSS).
Otto TD; Gomes LH; Alves-Ferreira M; de Miranda AB; Degrave WM
BMC Bioinformatics; 2008 Sep; 9():366. PubMed ID: 18782453
[TBL] [Abstract][Full Text] [Related]
8. Generalized gap model for bacterial artificial chromosome clone fingerprint mapping and shotgun sequencing.
Wendl MC; Waterston RH
Genome Res; 2002 Dec; 12(12):1943-9. PubMed ID: 12466299
[TBL] [Abstract][Full Text] [Related]
9. Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT.
Sarmashghi S; Balaban M; Rachtman E; Touri B; Mirarab S; Bafna V
PLoS Comput Biol; 2021 Nov; 17(11):e1009449. PubMed ID: 34780468
[TBL] [Abstract][Full Text] [Related]
10. A first survey of the rye (Secale cereale) genome composition through BAC end sequencing of the short arm of chromosome 1R.
Bartos J; Paux E; Kofler R; Havránková M; Kopecký D; Suchánková P; Safár J; Simková H; Town CD; Lelley T; Feuillet C; Dolezel J
BMC Plant Biol; 2008 Sep; 8():95. PubMed ID: 18803819
[TBL] [Abstract][Full Text] [Related]
11. Poisson process approximation for sequence repeats, and sequencing by hybridization.
Arratia R; Martin D; Reinert G; Waterman MS
J Comput Biol; 1996; 3(3):425-63. PubMed ID: 8891959
[TBL] [Abstract][Full Text] [Related]
12. Construction of bacterial artificial chromosome libraries from the parasitic nematode Brugia malayi and physical mapping of the genome of its Wolbachia endosymbiont.
Foster JM; Kumar S; Ganatra MB; Kamal IH; Ware J; Ingram J; Pope-Chappell J; Guiliano D; Whitton C; Daub J; Blaxter ML; Slatko BE
Int J Parasitol; 2004 May; 34(6):733-46. PubMed ID: 15111095
[TBL] [Abstract][Full Text] [Related]
13. RepARK--de novo creation of repeat libraries from whole-genome NGS reads.
Koch P; Platzer M; Downie BR
Nucleic Acids Res; 2014 May; 42(9):e80. PubMed ID: 24634442
[TBL] [Abstract][Full Text] [Related]
14. Major repeat components covering one-third of the ginseng (Panax ginseng C.A. Meyer) genome and evidence for allotetraploidy.
Choi HI; Waminal NE; Park HM; Kim NH; Choi BS; Park M; Choi D; Lim YP; Kwon SJ; Park BS; Kim HH; Yang TJ
Plant J; 2014 Mar; 77(6):906-16. PubMed ID: 24456463
[TBL] [Abstract][Full Text] [Related]
15. Poly: a quantitative analysis tool for simple sequence repeat (SSR) tracts in DNA.
Bizzaro JW; Marx KA
BMC Bioinformatics; 2003 Jun; 4():22. PubMed ID: 12791171
[TBL] [Abstract][Full Text] [Related]
16. Identification of functional elements in unaligned nucleic acid sequences by a novel tuple search algorithm.
Wolfertstetter F; Frech K; Herrmann G; Werner T
Comput Appl Biosci; 1996 Feb; 12(1):71-80. PubMed ID: 8670622
[TBL] [Abstract][Full Text] [Related]
17. The role of alphoid higher order repeats (HORs) in the centromere folding.
Rosandić M; Gluncić M; Paar V; Basar I
J Theor Biol; 2008 Oct; 254(3):555-60. PubMed ID: 18625244
[TBL] [Abstract][Full Text] [Related]
18. Clone-array pooled shotgun mapping and sequencing: design and analysis of experiments.
Csürös M; Li B; Milosavljevic A
Genome Inform; 2003; 14():186-95. PubMed ID: 15706533
[TBL] [Abstract][Full Text] [Related]
19. Sequencing and analysis of four BAC clones containing innate immune genes from the Zhikong scallop (Chlamys farreri).
Zhao C; Zhang T; Zhang X; Hu S; Xiang J
Gene; 2012 Jul; 502(1):9-15. PubMed ID: 22542508
[TBL] [Abstract][Full Text] [Related]
20. A statistical approach for array CGH data analysis.
Picard F; Robin S; Lavielle M; Vaisse C; Daudin JJ
BMC Bioinformatics; 2005 Feb; 6():27. PubMed ID: 15705208
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
