These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

219 related articles for article (PubMed ID: 12912825)

  • 1. Comprehensive aligned sequence construction for automated design of effective probes (CASCADE-P) using 16S rDNA.
    DeSantis TZ; Dubosarskiy I; Murray SR; Andersen GL
    Bioinformatics; 2003 Aug; 19(12):1461-8. PubMed ID: 12912825
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.
    Seo J; Bakay M; Chen YW; Hilmer S; Shneiderman B; Hoffman EP
    Bioinformatics; 2004 Nov; 20(16):2534-44. PubMed ID: 15117752
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Selecting signature oligonucleotides to identify organisms using DNA arrays.
    Kaderali L; Schliep A
    Bioinformatics; 2002 Oct; 18(10):1340-9. PubMed ID: 12376378
    [TBL] [Abstract][Full Text] [Related]  

  • 4. bioOTU: An Improved Method for Simultaneous Taxonomic Assignments and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences.
    Chen SY; Deng F; Huang Y; Jia X; Liu YP; Lai SJ
    J Comput Biol; 2016 Apr; 23(4):229-38. PubMed ID: 26950196
    [TBL] [Abstract][Full Text] [Related]  

  • 5. NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes.
    DeSantis TZ; Hugenholtz P; Keller K; Brodie EL; Larsen N; Piceno YM; Phan R; Andersen GL
    Nucleic Acids Res; 2006 Jul; 34(Web Server issue):W394-9. PubMed ID: 16845035
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Selection of oligonucleotide probes for protein coding sequences.
    Wang X; Seed B
    Bioinformatics; 2003 May; 19(7):796-802. PubMed ID: 12724288
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy.
    Hu G; Llinás M; Li J; Preiser PR; Bozdech Z
    BMC Bioinformatics; 2007 Sep; 8():350. PubMed ID: 17880708
    [TBL] [Abstract][Full Text] [Related]  

  • 8. In silico gene selection strategy for custom microarray design.
    Dondeti VR; Sipe CW; Saha MS
    Biotechniques; 2004 Nov; 37(5):768-70, 772, 774-6. PubMed ID: 15560133
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DMclust, a Density-based Modularity Method for Accurate OTU Picking of 16S rRNA Sequences.
    Wei ZG; Zhang SW; Zhang YZ
    Mol Inform; 2017 Dec; 36(12):. PubMed ID: 28586119
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Molecular beacon sequence design algorithm.
    Monroe WT; Haselton FR
    Biotechniques; 2003 Jan; 34(1):68-70, 72-3. PubMed ID: 12545542
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Distribution of words with a predefined range of mismatches to a DNA probe in bacterial genomes.
    Melko OM; Mushegian AR
    Bioinformatics; 2004 Jan; 20(1):67-74. PubMed ID: 14693810
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A generic approach for the design of whole-genome oligoarrays, validated for genomotyping, deletion mapping and gene expression analysis on Staphylococcus aureus.
    Charbonnier Y; Gettler B; François P; Bento M; Renzoni A; Vaudaux P; Schlegel W; Schrenzel J
    BMC Genomics; 2005 Jun; 6():95. PubMed ID: 15963225
    [TBL] [Abstract][Full Text] [Related]  

  • 13. matchprobes: a Bioconductor package for the sequence-matching of microarray probe elements.
    Huber W; Gentleman R
    Bioinformatics; 2004 Jul; 20(10):1651-2. PubMed ID: 14988118
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Updating the 97% identity threshold for 16S ribosomal RNA OTUs.
    Edgar RC
    Bioinformatics; 2018 Jul; 34(14):2371-2375. PubMed ID: 29506021
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A De Novo Robust Clustering Approach for Amplicon-Based Sequence Data.
    Bazin A; Debroas D; Mephu Nguifo E
    J Comput Biol; 2019 Jun; 26(6):618-624. PubMed ID: 30517025
    [No Abstract]   [Full Text] [Related]  

  • 16. Fast large scale oligonucleotide selection using the longest common factor approach.
    Rahmann S
    J Bioinform Comput Biol; 2003 Jul; 1(2):343-61. PubMed ID: 15290776
    [TBL] [Abstract][Full Text] [Related]  

  • 17. PROBEmer: A web-based software tool for selecting optimal DNA oligos.
    Emrich SJ; Lowe M; Delcher AL
    Nucleic Acids Res; 2003 Jul; 31(13):3746-50. PubMed ID: 12824409
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Group testing with DNA chips: generating designs and decoding experiments.
    Schliep A; Torney DC; Rahmann S
    Proc IEEE Comput Soc Bioinform Conf; 2003; 2():84-91. PubMed ID: 16452782
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Better genechip microarray layouts by combining probe placement and embedding.
    de Carvalho SA; Rahmann S
    J Bioinform Comput Biol; 2008 Jun; 6(3):623-41. PubMed ID: 18574866
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Studying long 16S rDNA sequences with ultrafast-metagenomic sequence classification using exact alignments (Kraken).
    Valenzuela-González F; Martínez-Porchas M; Villalpando-Canchola E; Vargas-Albores F
    J Microbiol Methods; 2016 Mar; 122():38-42. PubMed ID: 26812576
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.