2397 related articles for article (PubMed ID: 12914447)
1. The role of the putative catalytic base in the phosphoryl transfer reaction in a protein kinase: first-principles calculations.
Valiev M; Kawai R; Adams JA; Weare JH
J Am Chem Soc; 2003 Aug; 125(33):9926-7. PubMed ID: 12914447
[TBL] [Abstract][Full Text] [Related]
2. Physical nature of intermolecular interactions within cAMP-dependent protein kinase active site: differential transition state stabilization in phosphoryl transfer reaction.
Szarek P; Dyguda-Kazimierowicz E; Tachibana A; Sokalski WA
J Phys Chem B; 2008 Sep; 112(37):11819-26. PubMed ID: 18720966
[TBL] [Abstract][Full Text] [Related]
3. How does the cAMP-dependent protein kinase catalyze the phosphorylation reaction: an ab initio QM/MM study.
Cheng Y; Zhang Y; McCammon JA
J Am Chem Soc; 2005 Feb; 127(5):1553-62. PubMed ID: 15686389
[TBL] [Abstract][Full Text] [Related]
4. Is there a catalytic base in the active site of cAMP-dependent protein kinase?
Zhou J; Adams JA
Biochemistry; 1997 Mar; 36(10):2977-84. PubMed ID: 9062128
[TBL] [Abstract][Full Text] [Related]
5. Insights into the phosphoryl-transfer mechanism of cAMP-dependent protein kinase from quantum chemical calculations and molecular dynamics simulations.
Díaz N; Field MJ
J Am Chem Soc; 2004 Jan; 126(2):529-42. PubMed ID: 14719950
[TBL] [Abstract][Full Text] [Related]
6. A QM/MM study of Kemptide phosphorylation catalyzed by protein kinase A. The role of Asp166 as a general acid/base catalyst.
Pérez-Gallegos A; Garcia-Viloca M; González-Lafont À; Lluch JM
Phys Chem Chem Phys; 2015 Feb; 17(5):3497-511. PubMed ID: 25535906
[TBL] [Abstract][Full Text] [Related]
7. Role of Asp102 in the catalytic relay system of serine proteases: a theoretical study.
Ishida T; Kato S
J Am Chem Soc; 2004 Jun; 126(22):7111-8. PubMed ID: 15174882
[TBL] [Abstract][Full Text] [Related]
8. A QM/MM study of the phosphoryl transfer to the Kemptide substrate catalyzed by protein kinase A. The effect of the phosphorylation state of the protein on the mechanism.
Montenegro M; Garcia-Viloca M; Lluch JM; González-Lafont A
Phys Chem Chem Phys; 2011 Jan; 13(2):530-9. PubMed ID: 21052604
[TBL] [Abstract][Full Text] [Related]
9. Computer simulation of the chemical catalysis of DNA polymerases: discriminating between alternative nucleotide insertion mechanisms for T7 DNA polymerase.
Florián J; Goodman MF; Warshel A
J Am Chem Soc; 2003 Jul; 125(27):8163-77. PubMed ID: 12837086
[TBL] [Abstract][Full Text] [Related]
10. Evidence for an internal entropy contribution to phosphoryl transfer: a study of domain closure, backbone flexibility, and the catalytic cycle of cAMP-dependent protein kinase.
Li F; Gangal M; Juliano C; Gorfain E; Taylor SS; Johnson DA
J Mol Biol; 2002 Jan; 315(3):459-69. PubMed ID: 11786025
[TBL] [Abstract][Full Text] [Related]
11. A dianionic phosphorane intermediate and transition states in an associative A(N)+D(N) mechanism for the ribonucleaseA hydrolysis reaction.
Elsässer B; Valiev M; Weare JH
J Am Chem Soc; 2009 Mar; 131(11):3869-71. PubMed ID: 19245210
[TBL] [Abstract][Full Text] [Related]
12. Computational study of the phosphoryl transfer catalyzed by a cyclin-dependent kinase.
De Vivo M; Cavalli A; Carloni P; Recanatini M
Chemistry; 2007; 13(30):8437-44. PubMed ID: 17636466
[TBL] [Abstract][Full Text] [Related]
13. Is the bound substrate in nitric oxide synthase protonated or neutral and what is the active oxidant that performs substrate hydroxylation?
de Visser SP; Tan LS
J Am Chem Soc; 2008 Oct; 130(39):12961-74. PubMed ID: 18774806
[TBL] [Abstract][Full Text] [Related]
14. Role of histidine-85 in the catalytic mechanism of thymidine phosphorylase as assessed by targeted molecular dynamics simulations and quantum mechanical calculations.
Mendieta J; Martín-Santamaría S; Priego EM; Balzarini J; Camarasa MJ; Pérez-Pérez MJ; Gago F
Biochemistry; 2004 Jan; 43(2):405-14. PubMed ID: 14717594
[TBL] [Abstract][Full Text] [Related]
15. Kinetic and structural studies on the catalytic role of the aspartic acid residue conserved in copper amine oxidase.
Chiu YC; Okajima T; Murakawa T; Uchida M; Taki M; Hirota S; Kim M; Yamaguchi H; Kawano Y; Kamiya N; Kuroda S; Hayashi H; Yamamoto Y; Tanizawa K
Biochemistry; 2006 Apr; 45(13):4105-20. PubMed ID: 16566584
[TBL] [Abstract][Full Text] [Related]
16. Catalytic mechanism of glycosyltransferases: hybrid quantum mechanical/molecular mechanical study of the inverting N-acetylglucosaminyltransferase I.
Kozmon S; Tvaroska I
J Am Chem Soc; 2006 Dec; 128(51):16921-7. PubMed ID: 17177443
[TBL] [Abstract][Full Text] [Related]
17. On the role of the conserved aspartate in the hydrolysis of the phosphocysteine intermediate of the low molecular weight tyrosine phosphatase.
Asthagiri D; Liu T; Noodleman L; Van Etten RL; Bashford D
J Am Chem Soc; 2004 Oct; 126(39):12677-84. PubMed ID: 15453802
[TBL] [Abstract][Full Text] [Related]
18. Phosphoryl transfer by a concerted reaction mechanism in UMP/CMP-kinase.
Hutter MC; Helms V
Protein Sci; 2000 Nov; 9(11):2225-31. PubMed ID: 11152133
[TBL] [Abstract][Full Text] [Related]
19. Crystal structure of haloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26 at 0.95 A resolution: dynamics of catalytic residues.
Oakley AJ; Klvana M; Otyepka M; Nagata Y; Wilce MC; Damborský J
Biochemistry; 2004 Feb; 43(4):870-8. PubMed ID: 14744129
[TBL] [Abstract][Full Text] [Related]
20. Catalytic mechanism of the inverting N-acetylglucosaminyltransferase I: DFT quantum mechanical model of the reaction pathway and determination of the transition state structure.
Tvaroska I; André I; Carver JP
Glycobiology; 2003 Aug; 13(8):559-66. PubMed ID: 12672701
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
