BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

1756 related articles for article (PubMed ID: 12952881)

  • 21. Subdivision of the MDR superfamily of medium-chain dehydrogenases/reductases through iterative hidden Markov model refinement.
    Hedlund J; Jörnvall H; Persson B
    BMC Bioinformatics; 2010 Oct; 11():534. PubMed ID: 20979641
    [TBL] [Abstract][Full Text] [Related]  

  • 22. The effects of ordered-series-of-motifs anchoring and sub-class modeling on the generation of HMMs representing highly divergent protein sequences.
    Mcclure MA; Kowalski J
    Pac Symp Biocomput; 1999; ():162-70. PubMed ID: 10380194
    [TBL] [Abstract][Full Text] [Related]  

  • 23. PANTHER: Making genome-scale phylogenetics accessible to all.
    Thomas PD; Ebert D; Muruganujan A; Mushayahama T; Albou LP; Mi H
    Protein Sci; 2022 Jan; 31(1):8-22. PubMed ID: 34717010
    [TBL] [Abstract][Full Text] [Related]  

  • 24. HIPPI: highly accurate protein family classification with ensembles of HMMs.
    Nguyen NP; Nute M; Mirarab S; Warnow T
    BMC Genomics; 2016 Nov; 17(Suppl 10):765. PubMed ID: 28185571
    [TBL] [Abstract][Full Text] [Related]  

  • 25. ProbPFP: a multiple sequence alignment algorithm combining hidden Markov model optimized by particle swarm optimization with partition function.
    Zhan Q; Wang N; Jin S; Tan R; Jiang Q; Wang Y
    BMC Bioinformatics; 2019 Nov; 20(Suppl 18):573. PubMed ID: 31760933
    [TBL] [Abstract][Full Text] [Related]  

  • 26. HMM-based databases in InterPro.
    Bateman A; Haft DH
    Brief Bioinform; 2002 Sep; 3(3):236-45. PubMed ID: 12230032
    [TBL] [Abstract][Full Text] [Related]  

  • 27. PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API.
    Mi H; Ebert D; Muruganujan A; Mills C; Albou LP; Mushayamaha T; Thomas PD
    Nucleic Acids Res; 2021 Jan; 49(D1):D394-D403. PubMed ID: 33290554
    [TBL] [Abstract][Full Text] [Related]  

  • 28. HMMs in Protein Fold Classification.
    Lampros C; Papaloukas C; Exarchos T; Fotiadis DI
    Methods Mol Biol; 2017; 1552():13-27. PubMed ID: 28224488
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Meta-MEME: motif-based hidden Markov models of protein families.
    Grundy WN; Bailey TL; Elkan CP; Baker ME
    Comput Appl Biosci; 1997 Aug; 13(4):397-406. PubMed ID: 9283754
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Bioinformatic flowchart and database to investigate the origins and diversity of clan AA peptidases.
    Llorens C; Futami R; Renaud G; Moya A
    Biol Direct; 2009 Jan; 4():3. PubMed ID: 19173708
    [TBL] [Abstract][Full Text] [Related]  

  • 31. GPCR-GRAPA-LIB--a refined library of hidden Markov Models for annotating GPCRs.
    Shigeta R; Cline M; Liu G; Siani-Rose MA
    Bioinformatics; 2003 Mar; 19(5):667-8. PubMed ID: 12651732
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A Graph-Based Approach for Detecting Sequence Homology in Highly Diverged Repeat Protein Families.
    Wells JN; Marsh JA
    Methods Mol Biol; 2019; 1851():251-261. PubMed ID: 30298401
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Subfamily hmms in functional genomics.
    Brown D; Krishnamurthy N; Dale JM; Christopher W; Sjölander K
    Pac Symp Biocomput; 2005; ():322-33. PubMed ID: 15759638
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Isofunctional Protein Subfamily Detection Using Data Integration and Spectral Clustering.
    Boari de Lima E; Meira W; Melo-Minardi RC
    PLoS Comput Biol; 2016 Jun; 12(6):e1005001. PubMed ID: 27348631
    [TBL] [Abstract][Full Text] [Related]  

  • 36. A network of SCOP hidden Markov models and its analysis.
    Zhang L; Watson LT; Heath LS
    BMC Bioinformatics; 2011 May; 12():191. PubMed ID: 21635719
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Calibrating E-values for hidden Markov models using reverse-sequence null models.
    Karplus K; Karchin R; Shackelford G; Hughey R
    Bioinformatics; 2005 Nov; 21(22):4107-15. PubMed ID: 16123115
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Detecting distant homologs using phylogenetic tree-based HMMs.
    Qian B; Goldstein RA
    Proteins; 2003 Aug; 52(3):446-53. PubMed ID: 12866055
    [TBL] [Abstract][Full Text] [Related]  

  • 39. The identification of complete domains within protein sequences using accurate E-values for semi-global alignment.
    Kann MG; Sheetlin SL; Park Y; Bryant SH; Spouge JL
    Nucleic Acids Res; 2007; 35(14):4678-85. PubMed ID: 17596268
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Hidden Markov models for detecting remote protein homologies.
    Karplus K; Barrett C; Hughey R
    Bioinformatics; 1998; 14(10):846-56. PubMed ID: 9927713
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 88.